Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20920 1251 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G09620 1132 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 434 / 3e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 438 / 1e-138 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 414 / 8e-133 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 339 / 6e-103 DEAD box RNA helicase family protein (.1.2) AT3G06480 346 / 2e-101 DEAD box RNA helicase family protein (.1) AT3G01540 333 / 3e-101 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT2G33730 328 / 4e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 298 / 6e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003600 [exp] 1562 / 0 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 419 / 2e-133 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 425 / 3e-133 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G084600 [exp] 417 / 2e-132 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 406 / 6e-130 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 349 / 4e-105 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 354 / 1e-103 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.001G347100 [exp] 343 / 1e-102 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.019G130900 [exp] 333 / 5e-102 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035327 [exp] 948 / 0 AT1G20920 993 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025525 [exp] 428 / 3e-139 AT1G20920 451 / 2e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037527 [exp] 435 / 7e-137 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011466 [exp] 435 / 7e-130 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 407 / 1e-128 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 406 / 4e-128 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 400 / 2e-127 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 399 / 6e-127 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10029986 [exp] 352 / 4e-108 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10032133 [exp] 352 / 2e-107 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G257400.5 pacid=42802435 polypeptide=Potri.005G257400.5.p locus=Potri.005G257400 ID=Potri.005G257400.5.v4.1 annot-version=v4.1 ATGGAGGATGTGAAACCTAAATCTAGAAAAAATGATTATTTGGCACGGAAGGAGGAGAAAGAGGATTCTAAGAGGATTCATCGAGATAGAGACAAGCAGA GGAATGGAGAGAGGCACAGAGACAGAGAGAAGAGAGAACGCGAAAACAGTAGGTGTTCCGAGAGAGACAAGAGTAGCGATTCTGATGACAAGGAAAGGGA GAAAGAGAAGCACAGAGTCAGAGGTAGGGATGATAGGGCAACAAGGAGTAGGGTTGATGATAGAGAGAGAGTTAAGGACAGGAAGAGAGATAGAGACAGA GAAGAGAGAGACAGGGAGAGGGACATAGCGAAAGAGGAGAAGAAGGAGAGGGAGAGGGAGAAGGAGAAGGAGAGGGAGAAGGAGAGGGAGAAGGAGAAGG AGAAGGAGAGGGTTAGGGAGAAAGATAGAGAAAGAGAAAGTGGGAAGAGGGAACGTGAGAGGGAGAAAGACAGAGAAAGGGAGAGGAGGGAGCGTGACAG AGAAGAGCGAGAAAGGGAGAAGGGCAGGGAGAAGAGGGAGAGGAGGACCAGGGAAAGGGAGAAGCATAGGGAATTGAGTAGTGACAGTGATGATGACTCA GGGGAGCATGATAGTAAACTGCGAAGGAGAGACAATGACGACTCCAAGGAGAGAGTGCATGAGCAGAGCATTAGCAGGTCAAACAGGCACATGGATAACA GTGAAGAGAGCCTAAGGAAAAAGAGTGGCAAGGAGGACGGTGATAAGAACGAGAGTAAAACCCGAGAAGATGAATTAGAGGAGGAGCAGAAGAAATTGGA TGAGGAGATGGAGAAGAGGAGGAGAAGAGTCCAGGAATGGCAAGAGCTGAGAAGGAAGAAGGAAGAAACTGAGAGTGAAAAGGGTGGGGAAGAAGCCAAT GTTGATGAATCTAAGAGTGGTAAAACCTGGACTCTTGAAGGAGAATCTGACGACGAAGAAGCACCTCCCACTGGCAAATCCGATATGGACATTGACCAGG AGGAAAATGCAATACCTGATAAAGAAGCTGGAGATGCAATGGTGGTGGACACTGAGAATGACATTTCTGCTCCACAAAGTGAGGTTGATGCTGTTAATGG GGATGAGGAAATTGATCCATTGGATGCTTTCATGAATTCTATGGTCTTACCTGAGGTTGAGATGCTAAACAATGCTGTGGTTACTCAGACTGCTGATGAT AATAAAGCAGACTCAAAGAAGAAAGATAAGAATGATGAAGGAATAAATGGAGGACAGCGGAAGAAAGGCTCTCATAAATCTCTAGGGAGAATTATTCCTG GAGAAGATTCTGATTCAGACCACGGGGACCTTGAAAATAGTGAAGTTCCTTTAGAAGATGAGGATGATGACGAGTTCATGAAGAGGGTGAAGAAAACAAA AGCTGAGAAACTGTCCATTGTTGACCACTCAAAGATTGATTACAGTCCTTTCCGCAAGAATTTCTATATTGAAGTGAAGGAGATCTTGAGGATGACTCCT GAGGAGGTTACTGCTTATAGGAAACTACTGGAGTTGAAAATACATGGAAAGGATGTGCCGAAACCAATTAAAACTTGGCACCAGACAGGACTCACAAGTA AAATTTTGGAGACAATAAAGAAACTTAATTATGAGAAACCGATGACAATTCAAGCTCAGGCACTGCCTATAATTATGAGTGGACGGGACTGCATAGGCAT TGCGAAAACTGGTTCTGGTAAAACCCTTGCATTTGTGCTGCCAATGCTGAGGCATATCAAGGACCAGCCTCCTGTAGAAGCTGGAGAAGGACCGATTGGG CTTATAATGGCGCCCACAAGGGAGCTTGTGCAGCAGATCCACAGTGATATTAGGAAGTTTACTAAGGCCCTGGGTATAAGATGTGTGCCCGTTTATGGAG GTTCTGGTGTAGCCCAGCAAATTAGTGAATTGAAACGGGGGACAGAGATAGTTGTCTGTACTCCAGGCAGGATGATTGACATACTTTGCACCAGTGGAGG GAAAATCACCAATCTTCGTAGAGTTACATATCTGGTTATGGATGAAGCCGACCGGATGTTTGACATGGGATTCGAACCTCAAATCACTAGAATTGTCCAA AATATTCGTCCAGATCATCAAACTGTACTCTTTTCTGCCACTTTCCCTCGGCAGGTTGAAACTTTGGCTCGTAAAGTACTGAACAAACCTGTGGAAATAC AGGTAGGTGGGAGGAGTGTGGTGAATAAGGACATCAATCAGCTGGTTGAGGTAAGACCAGAAGGTGAAAGGTGGTTTAGGTTGTTAGAACTACTTGGTGT ATGGAGCGAGAAGGGAAAAATTTTGGTATTTGTCCAATCACAGGACAAATGTGATGCGTTGTTTAGGGACTTGCTGAAGTTTGGTCATCCTTGCCTCTCA CTTCATGGGGCTAAGGATCAGACGGACCGTGAATCCACCATTTCGGATTTTAAGAGCAACGTCTGCAATTTGTTGATTGCAACAAGTGTTGCAGCCAGAG GCTTAGATGTGAAGGATCTAGAACTGGTGATCAATTATGATGTTCCAAATCATTATGAGGATTATGTTCACCGTGTTGGTCGGACTGGCCGAGCTGGTCG CAAAGGCTGTGCCATCACTTTTTTCTCCGAGGATGATGCAAGATATGCACCGGATCTTGTAAAAGCATTAGAACTCTCTGAGCAAGTTGTTCCACAAGAC TTGAAAGCCCTTGCTGATGGTTTTATGGTGAAAGTGAATCAGGGTCTGGAGCAAGCCCATGGAACTGGTTATGGTGGAAGTGGTTTTAAATTCAATGAGG AAGAGGATGAAAAGAGAATGGCGGCAAAGAAAGCACAAGCAAGAGAATATGGCTTCGAGGAAGAGAAGTCTGATTCAGAAGATGAAGATGAAGTTGTTCG GAAGGCAGGTGGTGACATCTCACAGCAGACTGCCCTTGCTCAGCAGATAGCTGCTCTTGCTGCTGTCTCAAAAATCCCTGCACCCGTGGCACCAACTCCT CACTCTGTTACTCAATTTCTTTCTAATGGTGGATTACCTGTTCCTCTCAATCAAGGTCCAGCAGTTGCATCTGTGACTGGGCTGCCTTTTGCTCATAGTA ATGAAGCTGCAGCCAGGGCAGCAGCAATGGCAGCCGCCATGAATTTGCAACACAACCTGGCAAGGATCCAAGCTGATGCAATGCCTGAACATTATGAAGC AGAGCTGGAAATCAATGATTTTCCCCAAAATGCTCGGTGGAAGGTTACCCACAAGGAAACTTTGGGCCCAATTTCAGATTGGACTGGTGCTGCCATTACC ACCAGGGGGCAGTTTTTCCCACCAGGCAAGGTGCCAGGACCAGGAGATCGCAAGCTGTACCTGTTCATCGAGGGCCCTACTGAGCAGTCTGTTAAGAGAG CTAAAGCTGATCTAAAACATGTTTTGGAAGACATCACGAACCAAACATATCAACTTCCTGGTGGAGCTCAACCAGGCAAATACTCGGTTGTATAA
AA sequence Show only first row Show all	>Potri.005G257400.5 pacid=42802435 polypeptide=Potri.005G257400.5.p locus=Potri.005G257400 ID=Potri.005G257400.5.v4.1 annot-version=v4.1 MEDVKPKSRKNDYLARKEEKEDSKRIHRDRDKQRNGERHRDREKRERENSRCSERDKSSDSDDKEREKEKHRVRGRDDRATRSRVDDRERVKDRKRDRDR EERDRERDIAKEEKKEREREKEKEREKEREKEKEKERVREKDRERESGKREREREKDRERERRERDREEREREKGREKRERRTREREKHRELSSDSDDDS GEHDSKLRRRDNDDSKERVHEQSISRSNRHMDNSEESLRKKSGKEDGDKNESKTREDELEEEQKKLDEEMEKRRRRVQEWQELRRKKEETESEKGGEEAN VDESKSGKTWTLEGESDDEEAPPTGKSDMDIDQEENAIPDKEAGDAMVVDTENDISAPQSEVDAVNGDEEIDPLDAFMNSMVLPEVEMLNNAVVTQTADD NKADSKKKDKNDEGINGGQRKKGSHKSLGRIIPGEDSDSDHGDLENSEVPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYSPFRKNFYIEVKEILRMTP EEVTAYRKLLELKIHGKDVPKPIKTWHQTGLTSKILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGEGPIG LIMAPTRELVQQIHSDIRKFTKALGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ NIRPDHQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDINQLVEVRPEGERWFRLLELLGVWSEKGKILVFVQSQDKCDALFRDLLKFGHPCLS LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKDLELVINYDVPNHYEDYVHRVGRTGRAGRKGCAITFFSEDDARYAPDLVKALELSEQVVPQD LKALADGFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEKRMAAKKAQAREYGFEEEKSDSEDEDEVVRKAGGDISQQTALAQQIAALAAVSKIPAPVAPTP HSVTQFLSNGGLPVPLNQGPAVASVTGLPFAHSNEAAARAAAMAAAMNLQHNLARIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAIT TRGQFFPPGKVPGPGDRKLYLFIEGPTEQSVKRAKADLKHVLEDITNQTYQLPGGAQPGKYSVV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20920			P-loop containing nucleoside t...		Potri.005G257400 [exp]	0	1
AT1G20920			P-loop containing nucleoside t...		Potri.002G003600 [exp]	1.00	0.9755
AT3G25840			Protein kinase superfamily pro...		Potri.010G126900 [exp]	2.44	0.9564
AT2G16940			Splicing factor, CC1-like (.1....		Potri.009G137200 [exp]	3.60	0.9203
AT4G31880			unknown protein		Potri.018G109600 [exp]	3.74	0.9359
AT3G25840			Protein kinase superfamily pro...		Potri.008G119100 [exp]	4.47	0.9461
AT4G35540			zinc ion binding;transcription...		Potri.004G084700 [exp]	4.47	0.9456
AT5G27230			Frigida-like protein (.1)		Potri.005G044100 [exp]	6.70	0.9256
					Potri.014G015200 [exp]	6.92	0.9209
AT3G15120			P-loop containing nucleoside t...		Potri.011G141400 [exp]	7.74	0.9363
AT5G40450			unknown protein		Potri.001G345300 [exp]	8.00	0.9152

Compare expression of checked genes

Potri.005G257400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.