Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33600 388 / 2e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G76470 325 / 1e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 265 / 5e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 254 / 4e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 254 / 8e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 249 / 1e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 246 / 8e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 243 / 1e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 243 / 1e-77 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G004100 [exp] 500 / 7e-179 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004500 [exp] 364 / 4e-125 AT2G33590 364 / 2e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 264 / 1e-85 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 260 / 4e-84 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 259 / 1e-83 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 258 / 2e-83 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 258 / 2e-83 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 256 / 1e-82 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.009G057800 [exp] 254 / 6e-82 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024138 [exp] 409 / 7e-143 AT2G33590 420 / 2e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012930 [exp] 385 / 1e-133 AT2G33590 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 275 / 8e-90 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 272 / 1e-86 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10042399 [exp] 252 / 7e-81 AT2G02400 457 / 7e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026273 [exp] 247 / 5e-79 AT2G02400 461 / 2e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 246 / 1e-78 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 244 / 3e-78 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 243 / 1e-77 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026385 [exp] 243 / 2e-77 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.005G257700.5 pacid=42803246 polypeptide=Potri.005G257700.5.p locus=Potri.005G257700 ID=Potri.005G257700.5.v4.1 annot-version=v4.1 ATGGGAACTATTTTACTAACGAAACGAGGATGGGATATGGATTGGATGCTCTTCTCCGTCGGTAGCACTTATTTGGAGTTATACTATACAGTTTTTTGTC TACCTTCTACCCAGATACAATTAATTACTACACCGCTTCTAGTTGTGGGCCATGGGACAAAGTCAATGCACAAAAAGTTGAAAAAAACCCACTCCTATGA CCAAAATAAAGATGCAAGAACAAGTTGGAATTTCTACTGCTGGGGCTTGGGGATGGCGTTGGAGAAGGGGAGTGTTTGCGTGACAGGTGCTGGAGGGTAC CTGGCTTCTTGGGTCGTCAAGCTTCTTCTCTCTAAGGACTATCTTGTCCATGGAACCGTTAGAGATCCTGCGGATGACAAGAATGCTCACTTGATGAAAA TTGACCAGGCAACGGAGAATCTCAAACTCTTTAAGGCAGATTTACTGGACTACAGCTCTCTTTCTTCTGCTATTCAAGGATGCAGAGGGGTCTTCCATGT TGCCAGCCCTGTTCCCTTCACTAGAGTGTCAAACCCCGAGGTGGAGGTGATCGAGCCAGCTGTAAAGGGCACACTAAATGTGCTTAAAGCATGTGCTGAG GCAAAGGTAAAAAGAGTTGTCATTGTGTCCTCTGGAAGTGCAGTTTTGTCAAACCCAAGCTGGCCCAAGGGTCAAGTGATGGATGAGAATTGCTGGTCTG ATAAGGAATACTGCAGAGCAACTAAGAATTGGTATAATCTTTCCAAGACAGAAGCAGAAAGTGAGGCTTGGGAATATGCAAAAAGGAGCGGGCTTGATGT AGTAGCAATTTGTCCTTCCCTCATTTTGGGGCCAATTCTGCAGTCCACAGTTAACGCAAGTACAATGGTTCTTATTAAGATTTTGAAAGATGGGTGCGAC TCGTTGGAAAACAAGCTTCGGCCAATAATAGATGTTCGTGATGTGACTGAAGCACTGCTTTTGGCATATGAGACACCTGAGGCAGAAGGTAGATACATAT GCACGGCACATGCAATCAGAGTTAAAGATCTAGTGGAGAAATTGAGGAGCATGTATCCTAACTACAACTATCCTAAAAGTTTCACTGAAGAAGAGCAGGA AGCAGTGATGATCAGTTCAGAAAAGTTGCAGAGGCTCGGTTGGAGTTTCCGTTCATTGGAGGAAACTCTCATTGACTCCGTGGAAAACTATCAGAAGACT GGACTCCTGGATTAA
AA sequence Show only first row Show all	>Potri.005G257700.5 pacid=42803246 polypeptide=Potri.005G257700.5.p locus=Potri.005G257700 ID=Potri.005G257700.5.v4.1 annot-version=v4.1 MGTILLTKRGWDMDWMLFSVGSTYLELYYTVFCLPSTQIQLITTPLLVVGHGTKSMHKKLKKTHSYDQNKDARTSWNFYCWGLGMALEKGSVCVTGAGGY LASWVVKLLLSKDYLVHGTVRDPADDKNAHLMKIDQATENLKLFKADLLDYSSLSSAIQGCRGVFHVASPVPFTRVSNPEVEVIEPAVKGTLNVLKACAE AKVKRVVIVSSGSAVLSNPSWPKGQVMDENCWSDKEYCRATKNWYNLSKTEAESEAWEYAKRSGLDVVAICPSLILGPILQSTVNASTMVLIKILKDGCD SLENKLRPIIDVRDVTEALLLAYETPEAEGRYICTAHAIRVKDLVEKLRSMYPNYNYPKSFTEEEQEAVMISSEKLQRLGWSFRSLEETLIDSVENYQKT GLLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.005G257700 [exp]	0	1
AT3G14420			Aldolase-type TIM barrel famil...		Potri.004G065200 [exp]	1.00	0.8904
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Potri.001G061900 [exp]	3.00	0.8556
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Potri.007G059000 [exp]	3.46	0.8500
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.001G101100 [exp]	4.00	0.8242
AT4G19460			UDP-Glycosyltransferase superf...		Potri.001G128300 [exp]	10.19	0.8404
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	10.67	0.8212
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	11.22	0.8636
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.005G192300 [exp]	17.00	0.8218
AT1G25500			Plasma-membrane choline transp...		Potri.008G118200 [exp]	18.97	0.7741
					Potri.001G062100 [exp]	21.81	0.8122

Compare expression of checked genes

Potri.005G257700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.