Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76550 1064 / 0 Phosphofructokinase family protein (.1) AT1G20950 1058 / 0 Phosphofructokinase family protein (.1) AT1G12000 400 / 1e-132 Phosphofructokinase family protein (.1) AT4G04040 392 / 2e-129 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT5G56630 65 / 9e-11 PFK7 phosphofructokinase 7 (.1) AT4G26270 57 / 2e-08 PFK3 phosphofructokinase 3 (.1) AT4G29220 57 / 2e-08 PFK1 phosphofructokinase 1 (.1) AT4G32840 54 / 2e-07 PFK6 phosphofructokinase 6 (.1) AT5G47810 51 / 2e-06 PFK2 phosphofructokinase 2 (.1) AT5G61580 49 / 8e-06 PFK4 phosphofructokinase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003100 [exp] 1126 / 0 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015900 [exp] 399 / 3e-132 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.006G281900 [exp] 399 / 3e-132 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.004G003800 [exp] 389 / 3e-128 AT1G12000 946 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015600 [exp] 289 / 2e-92 AT1G12000 637 / 0.0 Phosphofructokinase family protein (.1) Potri.010G106950 [exp] 88 / 5e-21 AT1G20950 87 / 2e-21 Phosphofructokinase family protein (.1) Potri.006G024500 [exp] 71 / 2e-14 AT1G20950 67 / 5e-14 Phosphofructokinase family protein (.1) Potri.006G152600 [exp] 58 / 1e-08 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 56 / 4e-08 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025167 [exp] 1117 / 0 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10016047 [exp] 1106 / 0 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10038700 [exp] 330 / 5e-106 AT1G12000 875 / 0.0 Phosphofructokinase family protein (.1) Lus10037972 [exp] 211 / 5e-61 AT4G04040 498 / 9e-173 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) Lus10005488 [exp] 59 / 9e-09 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10011143 [exp] 59 / 1e-08 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10006032 [exp] 57 / 2e-08 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 57 / 3e-08 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 55 / 2e-07 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10035001 [exp] 54 / 2e-07 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00365 [poplar] [flax] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Potri.005G257800.3 pacid=42805402 polypeptide=Potri.005G257800.3.p locus=Potri.005G257800 ID=Potri.005G257800.3.v4.1 annot-version=v4.1 ATGGATTCCGATTTCGGCATTCCCAGAGAACTTTCCGATCTCCAGAAACTTCGATCTCTTTACCAACCAGAACTTCCTCCCTGTCTTCAGGGAACTGCAG TGAGGGTAGAACTTGGTGATGCAACCACTGCTGCAGACCCAGCTGATGTCCACAGCATAAGCCGATCCTTTCCCCTCACTTATGGCCAGCCTTTAGCTCA CTTCCTCAGGGCATCTGCTAAAGTCTCTGATGCTCAAATCATAACTGACCATCCAGCTTTCAGGGTCGGAATAGTTTTTTGTGGGAGACAATCTCCTGGA GGACATAATGTCATATGGGGTCTTCACAACGCTCTTAAAATCCATAACCCTAACAGCACTTTACTTGGATTTCTAGGAGGTTCTGAAGGTTTATTCGCTC AGAAAACACTTGAAATTACAGATGACATTCTTTCAACCTACAAAAATCAAGGTGGTTATGATTTGTTGGGACGGACAAAAGATCAAATAAGAACAACTGA ACAGGTTAATGCTGCTCTAACTGCATGCAAAGATCTGAAATTGGATGGCCTTGTTATCATTGGAGGAGTTACTTCAAATACAGATGCCGCTCAGCTTGCT GAAACATTTGCCGAGGCAAAATGCCCAACAAAGGTGGTTGGTGTTCCTGTTACTTTAAATGGAGATCTCAAGAATCAATTTGTGGAAACCAATGTTGGTT TTGATACAATATGCAAGGTCAATTCCCAGCTCATCAGCAATGTCTGCACGGATGCTCTCTCTGCAGAGAAGTATTATTATTTCATCCGGCTCATGGGCCG AAAGGCATCACATGTTGCTTTGGAATGTACACTTCAGTCTCATCCGAACATGGTTATTCTTGGCGAGGAGGTGGCTGCATCAAAGCTTACTCTTTTTGAC TTGACAACACAAATTTGTGATGCAGTCCAAGCCCGAGCAGTGCAAGACAAGAATCATGGAGTCATTCTACTGCCAGAGGGACTCATAGAAAGCATTCCCG AGGTCTATGCTCTCTTGAAGGAAATACATGGCTTACTCAGGCATGGTGTTGCCCCTGACAACATTTCATCACAGCTTTCACCATGGACATCTGCTTTATT TGAATTTTTGCCACCATATATTAAGAAGCAGCTGCTGCTTCATCCTGAATCAGATGACTCGGCACAATTATCCCAGATTGAAACAGAGAAACTTCTAGCT CATCTTGTGGAGACAGAAATGAACAAGCGGCTGAAAGAAGGCACATACACGGGGAAAAAGTTCAATGCTATCTGCCACTTTTTTGGTTATCAGGCCCGTG GGTCTTTACCATCGAAATTCGATTGCGACTATGCCTATGTTCTTGGGCACATCAGCTACCATATTTTAGCAGCTGGTTTGAATGGTTACATGGCCACTGT AACTAACCTAAAGAATCCTGTGAACAAGTGGCGATGTGGTGCTGCTCCAATTACAGCAATGATGACAGTGAAGCGTTGGGCTCAAAGCCCTGGTGCATCT TCAATTGGAAAACCTGCTATTCATCCTGCTACTGTGGATTTGAAAGGCAAAGCATATGAGCTGCTGAGACAAAATGCAGGAAGGTTTTGGATGGATGACC TGTACAGAAATCCAGGTCCCCTTCAATTTGATGGTCCTGGTGCGGATTCTAAGGCTGTAACTCTCTGTGTTGAAGACCAGGATTATATGGGCGGGATCAA GAAGCTGCAGGAATACCTTGACAAGGTAAGAAACATTGTGAAACCAGGGTGTTCTCAGGAAGTTCTGAAAGCTGCTTTGAGTGTCATGTCTTCCGTGACA GATGTTCTCTCTGTTATGTCTTCAACTTCATCCAATGGCCAGACACCTCTGTAA
AA sequence Show only first row Show all	>Potri.005G257800.3 pacid=42805402 polypeptide=Potri.005G257800.3.p locus=Potri.005G257800 ID=Potri.005G257800.3.v4.1 annot-version=v4.1 MDSDFGIPRELSDLQKLRSLYQPELPPCLQGTAVRVELGDATTAADPADVHSISRSFPLTYGQPLAHFLRASAKVSDAQIITDHPAFRVGIVFCGRQSPG GHNVIWGLHNALKIHNPNSTLLGFLGGSEGLFAQKTLEITDDILSTYKNQGGYDLLGRTKDQIRTTEQVNAALTACKDLKLDGLVIIGGVTSNTDAAQLA ETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASKLTLFD LTTQICDAVQARAVQDKNHGVILLPEGLIESIPEVYALLKEIHGLLRHGVAPDNISSQLSPWTSALFEFLPPYIKKQLLLHPESDDSAQLSQIETEKLLA HLVETEMNKRLKEGTYTGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHISYHILAAGLNGYMATVTNLKNPVNKWRCGAAPITAMMTVKRWAQSPGAS SIGKPAIHPATVDLKGKAYELLRQNAGRFWMDDLYRNPGPLQFDGPGADSKAVTLCVEDQDYMGGIKKLQEYLDKVRNIVKPGCSQEVLKAALSVMSSVT DVLSVMSSTSSNGQTPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76550			Phosphofructokinase family pro...		Potri.005G257800 [exp]	0	1
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144241 [exp]	2.44	0.9569
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.003G146200 [exp]	2.64	0.9613
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Potri.010G105900 [exp]	4.00	0.9604	Pt-ADL5.1
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.006G077900 [exp]	4.47	0.9407	PBA1.2
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	4.89	0.9526
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.010G224300 [exp]	5.91	0.9460	ADK2.2
AT1G79640			Protein kinase superfamily pro...		Potri.001G037900 [exp]	6.00	0.9222
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.004G043900 [exp]	6.16	0.9341	NSF.1
AT5G21070			unknown protein		Potri.004G196600 [exp]	7.07	0.9493
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.008G105300 [exp]	7.21	0.9381	ACLB.2

Compare expression of checked genes

Potri.005G257800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.