Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42990 101 / 9e-25 bZIP AtBZIP60 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) AT2G40950 47 / 1e-05 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56660 43 / 0.0002 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT2G41070 41 / 0.0006 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032400 [exp] 45 / 5e-05 AT2G40950 498 / 9e-167 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G034500 [exp] 43 / 0.0002 AT2G40950 475 / 1e-157 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.014G007100 [exp] 40 / 0.0008 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.002G003050 [exp] 0 / 1 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040069 [exp] 125 / 4e-33 AT1G42990 84 / 4e-18 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Lus10021534 [exp] 102 / 3e-26 AT1G42990 76 / 4e-17 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Lus10010440 [exp] 50 / 2e-06 AT2G40950 466 / 5e-155 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012104 [exp] 49 / 3e-06 AT2G40950 454 / 9e-150 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10038995 [exp] 44 / 0.0001 AT2G40950 421 / 2e-137 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027290 [exp] 44 / 0.0002 AT2G40950 429 / 2e-140 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF07716 [poplar] [flax] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.005G257900.2 pacid=42803633 polypeptide=Potri.005G257900.2.p locus=Potri.005G257900 ID=Potri.005G257900.2.v4.1 annot-version=v4.1 ATGGAATTTCTAGAAGGAGATGATGTGCTAGGGCAAATCGATTGGGATAATTTGTTGGATGGATTCCCGGATTCCGATAGCATCTTCGAATTAGAACCTC CTTTAACCACAGACTTGCAACCGATCAACGATTCTTCGAATTCATCATCACCTGCTACGGTTTCGTCTTGGATCGGAGAGGTTGAGACCTTGTTGATGAA AGATGACGACGATAAGGTTGATCAGCTGGAGAACTGCAACGCTTTCTTGGCAGATATTTTAGTTGATTCTCCTTCTGCTCACGAGTCTGGTGGCGAGGTC CTTGATGCTTCCACCGATAAGGATTCCACTTCTTCCGATGATGCTGACGGCGGCCCGAAGGAGAAAGACGACGGAGCGGAGGAGAAGAACAACAACGATG AGGAGGAAGATCCTGATGATATTGTGTCCAAGAAACGGAGAAGGCAGTTGAGAAATAAGGACGCGGCAGTGAGATCAAGGGAAAGGAAGAAGTTGCATGT GAGGGATCTTGAAATTAAGAGTAGGTATTTGGAAGGGGAATGCAGGAGGCTGGACAGGCTGCTTCAGTGTTTTATCGCGGAGAACCATGCTCTACGCCTT AGTTTACAGAGGGGCAATGCATTTGGTGTTACCTCGGCCAAGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTTTGGCTCC TGGGCATCATGTGCCTATTCCCCCAGCCTGCAATGCCCCAGTCAACAATGGTGGAAGTTCTACTAGAAACAATGGAAAAGAAAGCACCAGAAAACGTGGC TCAAAGAGGAGCAGGAAGTAAAATATTCATATCCTTGGCAAACAGTAGAAGATGCAAAGCTTCAAGGCCAAGGATGAAACTTACCGGTGTAATCTTTCCT TCTCTAAATTTGGTTTTGTAA
AA sequence Show only first row Show all	>Potri.005G257900.2 pacid=42803633 polypeptide=Potri.005G257900.2.p locus=Potri.005G257900 ID=Potri.005G257900.2.v4.1 annot-version=v4.1 MEFLEGDDVLGQIDWDNLLDGFPDSDSIFELEPPLTTDLQPINDSSNSSSPATVSSWIGEVETLLMKDDDDKVDQLENCNAFLADILVDSPSAHESGGEV LDASTDKDSTSSDDADGGPKEKDDGAEEKNNNDEEEDPDDIVSKKRRRQLRNKDAAVRSRERKKLHVRDLEIKSRYLEGECRRLDRLLQCFIAENHALRL SLQRGNAFGVTSAKQESAVLLLESLLLGSLLWLLGIMCLFPQPAMPQSTMVEVLLETMEKKAPENVAQRGAGSKIFISLANSRRCKASRPRMKLTGVIFP SLNLVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Potri.005G257900 [exp]	0	1
AT3G61790			Protein with RING/U-box and TR...		Potri.001G026200 [exp]	1.73	0.7659
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Potri.012G007500 [exp]	7.87	0.7181
AT5G54165			unknown protein		Potri.015G004800 [exp]	8.71	0.6436
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	13.30	0.7104
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.005G092800 [exp]	13.85	0.5874
AT1G25682			Family of unknown function (DU...		Potri.010G130300 [exp]	14.49	0.6058
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Potri.014G161100 [exp]	17.29	0.5513	Pt-TAFII59.1
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.004G086900 [exp]	25.09	0.5979
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.015G136400 [exp]	25.29	0.6025
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Potri.006G052200 [exp]	26.53	0.5932

Compare expression of checked genes

Potri.005G257900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.