Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27650 352 / 6e-123 C3HZnF ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2) AT5G42820 347 / 4e-121 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G10320 137 / 2e-36 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G44785 103 / 5e-28 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G16940 48 / 5e-06 Splicing factor, CC1-like (.1.2.3) AT1G60830 39 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003000 [exp] 383 / 3e-135 AT1G27650 349 / 2e-121 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.004G188900 [exp] 358 / 6e-125 AT5G42820 311 / 4e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.006G116700 [exp] 337 / 8e-117 AT5G42820 295 / 7e-100 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.009G149600 [exp] 133 / 1e-39 AT1G27650 137 / 1e-41 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.004G228600 [exp] 136 / 4e-36 AT1G10320 462 / 1e-151 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G148100 [exp] 48 / 3e-06 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.009G137200 [exp] 48 / 4e-06 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G177000 [exp] 46 / 2e-05 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.007G028500 [exp] 41 / 0.0006 AT4G36690 601 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009389 [exp] 347 / 2e-120 AT5G42820 362 / 3e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10003375 [exp] 336 / 4e-116 AT5G42820 357 / 3e-124 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10002845 [exp] 336 / 4e-116 AT5G42820 355 / 1e-123 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10008648 [exp] 335 / 6e-116 AT5G42820 358 / 6e-125 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020540 [exp] 332 / 6e-116 AT1G27650 323 / 7e-112 U2 snRNP auxiliary factor small subunit, putative (.1.2) Lus10038139 [exp] 144 / 6e-39 AT1G10320 570 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10010687 [exp] 62 / 1e-10 AT1G10320 288 / 9e-88 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10027830 [exp] 46 / 2e-05 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10005059 [exp] 45 / 6e-05 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10026858 [exp] 44 / 0.0001 AT5G16260 566 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.005G258000.1 pacid=42803486 polypeptide=Potri.005G258000.1.p locus=Potri.005G258000 ID=Potri.005G258000.1.v4.1 annot-version=v4.1 ATGGCGGAGCACTTAGCTTCAATCTTCGGTACCGAGAAAGACCGAGTTAATTGCCCTTTCTACTTCAAGATTGGCGCATGCCGTCACGGCGATCGCTGCT CTCGCCTCCACAATCGCCCCACCATCTCTCCCACTCTCTTATTATCCAACACGTACCACCGCCCTGACATGATTACTCCCGGTGTCGATGCTCAAGGCCA GCCACTCGACCCACACAAGATCCAGGAGCATTTCGAAGATTTTTATGAGGATATTTTTGAAGAACTAAGCAAATTTGGTGAGATCGAGAACCTTAATGTT TGTGATAACCTCGCCGATCACATGATCGGTAACGTTTATGTTCAGTTCAAGGAGGAGGACCAAGCTGCTGCCGCTTTGCAATCTCTTCAGGGACGATTTT ACTCTGGTCGTCCTATTATCGCCGATTTCTCTCCAGTCACTGATTTTCGTGAAGCTACCTGCAGACAGTACGAGGAGAATAACTGCAATCGTGGTGGTTA TTGTAATTTTATGCATGTGAAGCTGATTGGGAAGGATTTGCGGAGAAAGTTGTTTGGAAGATATCGGGGATACAGGGTTAGTAGGAGTCGGAGTAGGAGT GTGAGTCCGAGGAGGAGGGATAGAGATTATGATAGGCGTGAGAGGGATTACAGAGACAGAGACCGTGATTATCGTGGAAATGGGAGGAGGAATGACAGAG ACGGAGGGAGGAAAAGACACGGGAGTCCGAGGAGGAGCAGGAGCCCGGTCAGGGAAGGCAGCGAGGAAAGAAGGGCCAGGATTGAGCAGTGGAATAGAGA GAGGGAGGAGAAGCAGTGA
AA sequence Show only first row Show all	>Potri.005G258000.1 pacid=42803486 polypeptide=Potri.005G258000.1.p locus=Potri.005G258000 ID=Potri.005G258000.1.v4.1 annot-version=v4.1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNTYHRPDMITPGVDAQGQPLDPHKIQEHFEDFYEDIFEELSKFGEIENLNV CDNLADHMIGNVYVQFKEEDQAAAALQSLQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLIGKDLRRKLFGRYRGYRVSRSRSRS VSPRRRDRDYDRRERDYRDRDRDYRGNGRRNDRDGGRKRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.005G258000 [exp]	0	1
AT4G10090		ELP6	elongator protein 6 (.1)		Potri.008G046400 [exp]	1.41	0.7517
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.010G142400 [exp]	3.87	0.7380
AT2G17787			unknown protein		Potri.005G242300 [exp]	9.48	0.6689
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.003G104200 [exp]	10.48	0.7502
AT3G58630	Trihelix		sequence-specific DNA binding ...		Potri.003G118600 [exp]	12.84	0.6469
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	13.26	0.6701
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.014G108400 [exp]	14.83	0.7035
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.003G041650 [exp]	17.74	0.6034
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Potri.006G004900 [exp]	31.46	0.6905
AT4G28990			RNA-binding protein-related (....		Potri.006G160500 [exp]	32.07	0.5970

Compare expression of checked genes

Potri.005G258000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.