Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33560 481 / 3e-170 BUBR1 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) AT5G05510 99 / 1e-22 Mad3/BUB1 homology region 1 (.1) AT2G20635 91 / 9e-20 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G002900 [exp] 708 / 0 AT2G33560 460 / 8e-162 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.008G071900 [exp] 110 / 2e-26 AT5G05510 253 / 1e-77 Mad3/BUB1 homology region 1 (.1) Potri.010G185500 [exp] 110 / 3e-26 AT5G05510 261 / 8e-81 Mad3/BUB1 homology region 1 (.1) Potri.007G139000 [exp] 79 / 9e-16 AT2G20635 681 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013199 [exp] 495 / 5e-176 AT2G33560 426 / 1e-148 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10030714 [exp] 487 / 6e-173 AT2G33560 417 / 4e-145 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10009836 [exp] 108 / 1e-25 AT5G05510 390 / 2e-131 Mad3/BUB1 homology region 1 (.1) Lus10040947 [exp] 104 / 3e-24 AT5G05510 388 / 2e-130 Mad3/BUB1 homology region 1 (.1) Lus10017714 [exp] 74 / 6e-14 AT2G20635 604 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Lus10033673 [exp] 71 / 4e-13 AT2G20635 620 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08311 [poplar] [flax] Mad3_BUB1_I Mad3/BUB1 homology region 1
Representative CDS sequence Show only first row Show all	>Potri.005G258300.1 pacid=42804297 polypeptide=Potri.005G258300.1.p locus=Potri.005G258300 ID=Potri.005G258300.1.v4.1 annot-version=v4.1 ATGGAGATGGAAAAGTTGGATGCAGAGACGGAGTTTCTTGCGACAAAACAAGAGACGGGTAACGAGTGGGAACTGTTCAAAGAAAATGTAAGACCCCTGA AAAGAGGCCGAAACGTTGGCCTCTTGAATCAAGCCCTCAAATCCCACACAGACTATCAACTCAAGAAATCTCTCCTTGACACCCGAAGGAAGTTGATAGA AGCGATTGATGAGTATAAAGGGGATGATCCTCTCTTTCCATGGATTCAGTGTATAAAATGGGTTCAAGAGGCATTCCCACCAGGAGGAGACTGCTCAGGC CTCATACTCATATACGAACAATGCGTGCGTGCTTTTTGGCATTCCGACCGGTACAAGGATGATCTCCGTTACCTCAAAGTTTGGTTAGAATATGCTGAAA ATTGTGCTGATGCAGAAGTCATTTACAATTTTCTTGAAGCAAATGAAATTGGCAAGTCACATTCTGCTTATTACCTAGCATATGCTTTGCATATGGAATC CAAGTCTAAGATGAAAATTGCAAACGACATTTTCAATCTTGGGATATCTAGGGATGCTCAACCAGTAGAGAAATTGAAGGACGCCTATAGGAAGTTTCTT ATTAGGTCGATGAGAAAACCAAATGTTGTGGAGGACGACTCTGGAGAAAGTCACTTGCCAGTCCGAAGCTTTGGAACTGTCCTGTCCACTGCAGATAATC GGAGGCAAAATATGGAGAGATCTGAACTTGCAAGGAAACAAATGAAGCCAGACAGGACTCAAAAGATTCCCCTTTCTATTTTCAAAGACACAACAAGTAT TGACACCATGCCAGGACATCAATCAGGCAAGTCCAAGACAGATTTGAGTCCTTGGAGCACTCTTGGAGCTCGAGAAGAGAGAGACAAAGAAAATAGTGCA TTGCCTACCAAATGGACAACATACAAGATTCCTCGGAGACCTGGAGCTAGAACTGGAGGGGTAACTGCAAGCGCCTCCATTGAAGTGTTTGTTGACGAGG AATGTACAGAAATGGATAGATCACATGATCATGATGGCAAGTCTTCGACGTTGAAGCTGAGGCAGGGAGATGGCCTAGACATTAAGAAGGAAACAGATCT CTTAAGGGAGAATCCACTAAGGAACTTTCCTTTGCGCAGCCTTCCTAGGTGA
AA sequence Show only first row Show all	>Potri.005G258300.1 pacid=42804297 polypeptide=Potri.005G258300.1.p locus=Potri.005G258300 ID=Potri.005G258300.1.v4.1 annot-version=v4.1 MEMEKLDAETEFLATKQETGNEWELFKENVRPLKRGRNVGLLNQALKSHTDYQLKKSLLDTRRKLIEAIDEYKGDDPLFPWIQCIKWVQEAFPPGGDCSG LILIYEQCVRAFWHSDRYKDDLRYLKVWLEYAENCADAEVIYNFLEANEIGKSHSAYYLAYALHMESKSKMKIANDIFNLGISRDAQPVEKLKDAYRKFL IRSMRKPNVVEDDSGESHLPVRSFGTVLSTADNRRQNMERSELARKQMKPDRTQKIPLSIFKDTTSIDTMPGHQSGKSKTDLSPWSTLGAREERDKENSA LPTKWTTYKIPRRPGARTGGVTASASIEVFVDEECTEMDRSHDHDGKSSTLKLRQGDGLDIKKETDLLRENPLRNFPLRSLPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	0	1
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Potri.014G155900 [exp]	1.41	0.9731
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	1.73	0.9765
AT5G37010			unknown protein		Potri.012G145200 [exp]	3.16	0.9692
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.011G031200 [exp]	3.74	0.9682	ATK1.2
AT5G05240			Uncharacterised conserved prot...		Potri.019G058200 [exp]	4.12	0.9598
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Potri.001G272000 [exp]	4.58	0.9725
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	6.32	0.9720
AT4G13370			Plant protein of unknown funct...		Potri.018G072500 [exp]	6.48	0.9686
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.014G125100 [exp]	7.21	0.9606	ATCSLD5.1
AT3G16490		IQD26	IQ-domain 26 (.1)		Potri.001G190500 [exp]	9.27	0.9288

Compare expression of checked genes

Potri.005G258300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.