Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20980 966 / 0 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 871 / 0 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G47070 278 / 3e-79 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT3G60030 276 / 4e-78 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT5G18830 127 / 7e-30 SBP ATSPL7, SPL7 squamosa promoter binding protein-like 7 (.1.2.3) AT3G15270 98 / 3e-23 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT1G53160 96 / 1e-22 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT1G02065 98 / 1e-21 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G69170 98 / 2e-21 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G50670 97 / 2e-21 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G002400 [exp] 1683 / 0 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.014G114300 [exp] 295 / 2e-84 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.002G188700 [exp] 293 / 1e-83 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.008G098600 [exp] 283 / 5e-80 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.010G154000 [exp] 280 / 4e-79 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.008G197000 [exp] 119 / 4e-27 AT5G18830 657 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.010G026200 [exp] 114 / 1e-25 AT5G18830 664 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.012G100700 [exp] 109 / 1e-25 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.003G169400 [exp] 108 / 2e-25 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038043 [exp] 268 / 4e-75 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10009984 [exp] 258 / 1e-71 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10010071 [exp] 152 / 2e-37 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10004523 [exp] 140 / 1e-33 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10033993 [exp] 112 / 7e-25 AT5G18830 661 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10012782 [exp] 110 / 3e-24 AT5G18830 669 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10011348 [exp] 100 / 1e-22 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10003126 [exp] 100 / 2e-22 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10015764 [exp] 100 / 3e-22 AT5G50670 160 / 2e-45 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 102 / 5e-22 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.005G258700.1 pacid=42803407 polypeptide=Potri.005G258700.1.p locus=Potri.005G258700 ID=Potri.005G258700.1.v4.1 annot-version=v4.1 ATGGAAAAGGTGGGTGCGCAAGTAGCTGCTCCCATGTTCATTCACCAAGCACTTTCTAGTAGATATTGTGATTTGGCTTCCATGGCAAAAAAACGTGATC TTTCCTACCAGATGCCCAATTTTCAGCTCCAACAACATCACTTTCTTGAGACTTCTTTAGAAAAAAACTGGAATTCTAAGGCTTGGGATTGGGATAGCGT CGGTTTTGTTGCTAGACCTTCTGATGCTGCTGAAACTTCACGTCTGGGAACTGCATCTAGAGAGACTAAGAAGAAAGATGAGAGTGATTATAAGACCAAA TCCAACTCTGCTAATGAAGATGATGGTCTTGGCTTGAATCTAGGTGGGAGTTTGACTTCTGTTGAGGAGCCTGTATCAAGACCCAACAAGAGGGTCAGGT CTGGATCCCCTGCCAATGGTAGTTATCCAATGTGTCAGGTCGATAATTGCAAGGAAAATCTAACTACTGCTAAGGACTATCATCGCCGTCATAAGGTGTG CGAAGTTCATAGTAAAGCCACGAAAGCCCTGGTGGGAAAGCAAATGCAGAGATTTTGTCAGCAGTGCAGCAGGTTTCATCCTCTTACTGAGTTTGATGAG GGAAAGAGAAGTTGTAGGCGTAGGCTTGCTGGGCACAACCGACGAAGGAGGAAAACCCAGCCTGAGGATGTTACATCACGGCTACTAGTCCCTGGAAACC AGGATATAAACAGTAATGGAAACTTGGATATTGTAAACTTATTGACTGCTTTGGCTCGCTCTCAAGGGAGGGCCGACGATAAAAGTACCACCTGCACAAC AGTACCCGATAAAGACCAACTTATTCAGATTCTTAGCAAAATAAATTCACTGCCTTTGCCGATGGATCTTGCTGCAAAGTTGTCAAATATTGCAAGTTTA AATGGGAAAAATCCCGACCAACCTTCATCAGCGCATCAAAACAGATTGCATGGAACTGCATCTTCTTCATCAACCGTGGACTTACTTGCTGTACTTTCAG CCACTTTGGCAGCATCTGCTCCAGATGCTCTTGCAATTTTATCTCAAAGAAGCAGTCAGAGCAGTGACAGTGACAAGTCTAAGTTGACGGGCCCCAATCA AGTGACTGGTTCCGATTTGCAGAAGAGATCTAATATTGAGTTTCCTTCTGTGGGTGGTGAGAGAGTTAGTTACTGCTACGAGTCTCCTGTTGAAGATTCA GATTGCCAGATTCAAGAATCTCGTCCTAACTTTCCGTTACAGCTGTTTAGCTCGTCGCCTGAGAATGATAGCCCTCCAAAACTAGCATCTTCTAGGAAAT ATTTCTCTTCTGACAGCAGTAATCCCATTGAAGATAGGTCTCCATCATCTTCTCCTCCTGTAGCGCAGAAGTTGTTCCCATTGCAGAGTACTGCAGAAAC TATGAAGTCTGAGAAGATGTCAATCAGTAGAGAGGTGAATGCAAATGTTGAAGGTAGCAGGAGCCATGCCTGTGTTTTGCCGCTCGAGCTCTTTAGAGGT TCAAACAGAGAACCTGACCACGGTTCATTTCAAAATTTCCCTTATCAAGGAGGATATACGTCTTCTTCTGGGTCTGATCATTCACCTTCTAGTCAGAATT CTGATTCTCAGGATCGCACTGGGCGACTAATTTTTAAACTATTTGACAAGGATCCCAGTCATTTCCCTGGGACATTGCGCACACAGATATACAATTGGCT TTCTAACAGTCCATCAGAAATGGAGAGCTACATAAGGCCTGGCTGTGTGGTTCTATCAGTATATCTGTCAATGTCATCTGCTGCCTGGGAACAACTTGAA AGAAACCTGCTTCAGCAAGTCAATTCTCTGGTTCAAGATTCAGATTCTGATTTATGGAGGAGTGGAAGGTTTTTGTTAAATACAGGCGGGCAGCTAGCAT CACATAAAGATGGAAAGATTCGTTTGTGCAAATCATGGAGGACATGGAGTTCCCCAGAGTTGATATCAGTCTCCCCAGTGGCAGTTGTTGGTGGGCAAGA AACCTCTCTTCAGTTGAAGGGAAGAAATCTGACCAGTCCGGGCACCAAGATTCATTGCATGCACATGGGAGGATACACATTGAAGGAAATTACGGACTCC ACTTCTCCAGGGTCCATATACGATGAGATAAACATGGGTGGTTTCAAAATTCATGGTCCATCTCCTAGTATTTTAGGTCGATGTTTCATTGAGGTAGAAA ATGGTTTCAAGGTCAACAGTTTTCCTGTAATAATAGCTGATGCTTCCATCTGTAAAGAATTGAGACTCCTTGAATCAGAGTTTGATGAAAAGGCTAAAGT AGGTGATATTGTGTCAGAAGAACAGGCTCATGATTTGGGGCGACCTAGATCAAGGGAAGAAGTTTTGCATTTCTTAAATGAACTTGGATGGCTATTCCAA AGGAAGAGGGAGTCTTCAATTCTTGAGGTTCCAGATTTTTCACTTAGCCGCTTCAGGTTTTTGCTCATTTTCTCAGTTGAAAGAGACTATTGTGTGTTGG TCAAAACAATTCTGGACATGCTGGTAGAAAGAAATATGTGTAGGGATGAGCTATCTAAGGAGTCATTGGAGATGCTGTCTGAGGTTCAGCTCTTGAACCG GTCAGTGAAAAGGAGCTGCAGGAAAATGGTGGACTTGCTTATTCATTATTCTATTGTCAGCCATGATAATTCCTCCAGAACGTATATTTTCCCACCAAAT GTTAGGGGGCCTGGTGGTATTACACCTTTACATTTGGTTGCTTGTGCATCAGGCTCAGATGGTTTAGTTGATGCCCTGACAAATGACCCACATGAGATTG GGCTGTCCTGTTGGAATTCTCTTCTGGATGCAAATGGCCAGTCTCCATATGCCTATGCTCTCATGACAAAAAACCACTCTTATAACTTATTGGTGGCTCG TAAACTTGCTGACAAAATAAATGCCCAGGTTTCTGTGACAATTGGAAATGAGATAGAACAACCAGCGTTGGAGCAAGAACATGGGGCAGTTTCACAGTTT CAGCAAGGGCGTAAATCCTGTGCTAAGTGTGCAATTGTAGCGGCTAAGTTCCACAAGAGGGTTCCAGGTTCACAGGGCTTGCTTCAGCGTCCCTATGTTC ATTCAATGCTAGCTATTGCTGCTGTCTGTGTTTGTGTCTGCCTGTTCTTCCGAGGTGCCCCAAACATTGGCTTGGTTGCTCCCTTCAAATGGGAGAATTT GGATTTCGGAACCATTTAG
AA sequence Show only first row Show all	>Potri.005G258700.1 pacid=42803407 polypeptide=Potri.005G258700.1.p locus=Potri.005G258700 ID=Potri.005G258700.1.v4.1 annot-version=v4.1 MEKVGAQVAAPMFIHQALSSRYCDLASMAKKRDLSYQMPNFQLQQHHFLETSLEKNWNSKAWDWDSVGFVARPSDAAETSRLGTASRETKKKDESDYKTK SNSANEDDGLGLNLGGSLTSVEEPVSRPNKRVRSGSPANGSYPMCQVDNCKENLTTAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHPLTEFDE GKRSCRRRLAGHNRRRRKTQPEDVTSRLLVPGNQDINSNGNLDIVNLLTALARSQGRADDKSTTCTTVPDKDQLIQILSKINSLPLPMDLAAKLSNIASL NGKNPDQPSSAHQNRLHGTASSSSTVDLLAVLSATLAASAPDALAILSQRSSQSSDSDKSKLTGPNQVTGSDLQKRSNIEFPSVGGERVSYCYESPVEDS DCQIQESRPNFPLQLFSSSPENDSPPKLASSRKYFSSDSSNPIEDRSPSSSPPVAQKLFPLQSTAETMKSEKMSISREVNANVEGSRSHACVLPLELFRG SNREPDHGSFQNFPYQGGYTSSSGSDHSPSSQNSDSQDRTGRLIFKLFDKDPSHFPGTLRTQIYNWLSNSPSEMESYIRPGCVVLSVYLSMSSAAWEQLE RNLLQQVNSLVQDSDSDLWRSGRFLLNTGGQLASHKDGKIRLCKSWRTWSSPELISVSPVAVVGGQETSLQLKGRNLTSPGTKIHCMHMGGYTLKEITDS TSPGSIYDEINMGGFKIHGPSPSILGRCFIEVENGFKVNSFPVIIADASICKELRLLESEFDEKAKVGDIVSEEQAHDLGRPRSREEVLHFLNELGWLFQ RKRESSILEVPDFSLSRFRFLLIFSVERDYCVLVKTILDMLVERNMCRDELSKESLEMLSEVQLLNRSVKRSCRKMVDLLIHYSIVSHDNSSRTYIFPPN VRGPGGITPLHLVACASGSDGLVDALTNDPHEIGLSCWNSLLDANGQSPYAYALMTKNHSYNLLVARKLADKINAQVSVTIGNEIEQPALEQEHGAVSQF QQGRKSCAKCAIVAAKFHKRVPGSQGLLQRPYVHSMLAIAAVCVCVCLFFRGAPNIGLVAPFKWENLDFGTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.005G258700 [exp]	0	1
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Potri.010G153100 [exp]	2.00	0.8363
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.005G135100 [exp]	2.82	0.8338
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.005G113600 [exp]	5.83	0.8420	CPK18
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	6.32	0.8282
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014334 [exp]	7.54	0.8357
AT3G17120			unknown protein		Potri.010G148200 [exp]	8.00	0.7381
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145538 [exp]	8.71	0.7770
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.001G310500 [exp]	8.83	0.8257
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014324 [exp]	11.22	0.8151
AT1G68710			ATPase E1-E2 type family prote...		Potri.008G111200 [exp]	12.64	0.7931

Compare expression of checked genes

Potri.005G258700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.