Plant FIBer expression Database

Potri.005G258900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33570 707 / 0 Domain of unknown function (DUF23) (.1)
AT5G44670 422 / 1e-143 Domain of unknown function (DUF23) (.1)
AT4G20170 407 / 9e-138 Domain of unknown function (DUF23) (.1)
AT5G48190 108 / 3e-28 Domain of unknown function (DUF23) (.1)
AT3G60990 108 / 3e-28 Domain of unknown function (DUF23) (.1)
AT3G07380 105 / 2e-27 Domain of unknown function (DUF23) (.1)
AT3G27330 50 / 3e-06 zinc finger (C3HC4-type RING finger) family protein (.1)
AT1G27200 42 / 0.0007 Domain of unknown function (DUF23) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G074600
[exp]
444 / 3e-152 AT5G44670 613 / 0.0 Domain of unknown function (DUF23) (.1)
Potri.003G156600
[exp]
441 / 8e-151 AT5G44670 598 / 0.0 Domain of unknown function (DUF23) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008076
[exp]
444 / 3e-152 AT5G44670 642 / 0.0 Domain of unknown function (DUF23) (.1)
Lus10038387
[exp]
429 / 2e-146 AT5G44670 639 / 0.0 Domain of unknown function (DUF23) (.1)
Lus10036247
[exp]
428 / 6e-146 AT5G44670 649 / 0.0 Domain of unknown function (DUF23) (.1)
Lus10024731
[exp]
339 / 2e-111 AT5G44670 491 / 1e-170 Domain of unknown function (DUF23) (.1)
Lus10036676
[exp]
44 / 0.0003 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF01697 Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence
>Potri.005G258900.1 pacid=42805408 polypeptide=Potri.005G258900.1.p locus=Potri.005G258900 ID=Potri.005G258900.1.v4.1 annot-version=v4.1
ATGAGAAAGGACTGCCAGCCTCCCTCCTCCGGCGCCACAGTGAGCAAATTACCAGCATGCTTCGAGACAAAGCCCTTAGTGGCCACATTACTAGCCTTGA
CCTTGGTTATGCTCCTTTGGAACCTCCCTCCTTACTATCAAAACCTCCTCTCCACTACCACACGCCCCTCTTGCTCAGCCCCAGAAACCACCGTCTCCAT
ATCAAATACTTCCTCTTCGTTCACCAGTACCTCATTATCTGACCAAAAGTATTTATCCAGCTCGTCATCATCCTCATCTAACGCCGACCCAAACAAGCGG
ATCTTCCAGGCCTACGGAAACGCCGCCGCTCTCTTTGTTCAGATGGGTGCATACCGAGGAGGACCGACCACCTTTGCTGTGGTTGGCCTGGCTTCGAAGC
CCATTCACGTGTTCAGGCTTCCCTGGTACAAATGCGAGTGGATCTCTAACAATGGCTCTTCTATAAGGGCCAAGGCTTATAAGATGCTTCCTGACTGGGG
CTATGGTCGTGTCTACACAGTGGTGGTTGTGAATTGCACCTTCCCTGTCAATCCAAATCAAGACAATGCGGGTGGAAGGCTCATGCTTAATGCCTATTAT
GACGAGTCTCAGAGGAAGTACGAGAAATTCATGGCATTGGAGGAACTACCTGGCTCTTACAACGAGTCTAAATTCCGCCCACCTTATCAGTACGAGTATC
TTTACTGCGGGTCTTCTTTGTACGGGAATTTGAGTGCGTCGAGGTTTAGAGAATGGATGGCTTACCATGCCTGGTTCTTTGGACCCAGCTCTCATTTCGT
GTTTCACGATGCCGGCGGTGTGTCTCCTGAGGTGAGGGCTGCTCTTGACCCTTGGGTTCGTGCTGGGAGGGCTACTGTTCAGGATATAAGAGGGCAAGCT
GAGTTTGATGGGTATTACTATAACCAATTTCTGGTGGTGAATGACTGCTTGCATCGCTACAGATACTCTGCTAATTGGACATTTTACTTTGATGTGGATG
AGTATATCTATTTGCCCGAGGGGAATACTTTGGAATCTGTTTTGAAGGACTTCTCTAATTATACCCAGTTCACCATTGAGCAGAACCCAATGTCCAGTGC
ACTCTGCTTCAATGATTCCACTCAGGACTATCCCAGGCAATGGGGATTCGAAAAACTTTTATTCAGAGAATCAAGAACTGGGATACGAAGGGATCGCAAG
TACGCAATACAGGCTAAGAATGCATATGCTACAGGAGTGCACATGTCGGAGAATGTAATTGGCAAAACCTTGCACCAGACTGAAACAAAGATTCGATATT
ACCACTACCACAATTCCATACAAGTACCAGGCGAACTGTGCAGAGAATTCCTTCCTCTATCAGCAAAGAACAATGTGACTTGGTACAATGGGCTCCCTTA
TGTGTATGACGATAACATGAAGAAGCTGGCCAGCACCATCAAGGATTTTGAGCGCAACACAATTGGAAATGTACAGGCTTACTCATGA
AA sequence
>Potri.005G258900.1 pacid=42805408 polypeptide=Potri.005G258900.1.p locus=Potri.005G258900 ID=Potri.005G258900.1.v4.1 annot-version=v4.1
MRKDCQPPSSGATVSKLPACFETKPLVATLLALTLVMLLWNLPPYYQNLLSTTTRPSCSAPETTVSISNTSSSFTSTSLSDQKYLSSSSSSSSNADPNKR
IFQAYGNAAALFVQMGAYRGGPTTFAVVGLASKPIHVFRLPWYKCEWISNNGSSIRAKAYKMLPDWGYGRVYTVVVVNCTFPVNPNQDNAGGRLMLNAYY
DESQRKYEKFMALEELPGSYNESKFRPPYQYEYLYCGSSLYGNLSASRFREWMAYHAWFFGPSSHFVFHDAGGVSPEVRAALDPWVRAGRATVQDIRGQA
EFDGYYYNQFLVVNDCLHRYRYSANWTFYFDVDEYIYLPEGNTLESVLKDFSNYTQFTIEQNPMSSALCFNDSTQDYPRQWGFEKLLFRESRTGIRRDRK
YAIQAKNAYATGVHMSENVIGKTLHQTETKIRYYHYHNSIQVPGELCREFLPLSAKNNVTWYNGLPYVYDDNMKKLASTIKDFERNTIGNVQAYS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33570 Domain of unknown function (DU... Potri.005G258900
[exp]
0 1
AT3G13000 Protein of unknown function, D... Potri.006G216800
[exp]
1.41 0.8575
AT3G24480 Leucine-rich repeat (LRR) fami... Potri.006G158814
[exp]
2.23 0.8607
AT3G08900 RGP3 reversibly glycosylated polype... Potri.015G099400
[exp]
7.07 0.7950
AT2G01570 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSO... Potri.017G125200
[exp]
9.79 0.7463
AT1G09390 GDSL-like Lipase/Acylhydrolase... Potri.005G006500
[exp]
10.77 0.8298
AT4G23490 Protein of unknown function (D... Potri.001G100700
[exp]
10.95 0.7609
AT5G26960 Galactose oxidase/kelch repeat... Potri.001G271900
[exp]
11.35 0.7298
AT3G07470 Protein of unknown function, D... Potri.014G177800
[exp]
13.19 0.7092
AT2G46210 AtSLD2 sphingoid LCB desaturase 2, Fa... Potri.006G228200
[exp]
18.81 0.8188
AT4G14340 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casei... Potri.013G047200
[exp]
20.19 0.7018 Pt-CKI1.1

Potri.005G258900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.