Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 637 / 0 Protein kinase superfamily protein (.1) AT3G21630 246 / 6e-73 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT2G23770 242 / 4e-71 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G01840 238 / 4e-69 Protein kinase superfamily protein (.1) AT1G51940 217 / 1e-61 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G10620 184 / 2e-49 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G54820 176 / 3e-48 Protein kinase superfamily protein (.1) AT1G23540 176 / 1e-46 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G67720 176 / 4e-46 Leucine-rich repeat protein kinase family protein (.1) AT1G68690 172 / 3e-45 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032100 [exp] 475 / 2e-159 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 467 / 5e-157 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 417 / 5e-138 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 414 / 5e-137 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 317 / 1e-99 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 311 / 2e-97 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 279 / 2e-84 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.009G010300 [exp] 250 / 5e-74 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G226600 [exp] 246 / 1e-72 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000577 [exp] 444 / 3e-148 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 444 / 6e-148 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 402 / 3e-132 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 348 / 3e-111 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004504 [exp] 344 / 2e-109 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008586 [exp] 306 / 1e-94 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10021889 [exp] 271 / 9e-83 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10042225 [exp] 256 / 3e-79 AT2G33580 209 / 5e-62 Protein kinase superfamily protein (.1) Lus10041171 [exp] 250 / 2e-74 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10039406 [exp] 245 / 6e-74 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.005G259600.1 pacid=42802679 polypeptide=Potri.005G259600.1.p locus=Potri.005G259600 ID=Potri.005G259600.1.v4.1 annot-version=v4.1 ATGGACTTTCTTCTACTGTATCTGTATGTGGTGCTGCTGCTCTCACCAGCACTGGTACAAGGGCAACAAACCTATGTAGCCAACCACCAACTGGACTGCT ACAACAATGCCTTCAATGAAACGACCAAGGGATTTCTGTGCAACGGAGTTCAATCATCATGCCAATCCTACCTCACCTTCCGATCTATGCCTCCCTACAA TTCTCCTGTCCTTATTGCCTATCTCTTAGGCGTCCCACAATCCGCCACTCGCATCGCCTCCATCAATAACCTCTCCTCTGACACTGCCACTATTCCCACC AACACCCAGGTCGTGGTTCCAGTCAACTGCTCCTGTTATGCCCGTCAATATTACCAGCACAATTCCACCTATCAGCTCAAGGACAAATCCGAAACCTACT TCAGCGTGGCCAACAACACCTACCAAGGCCTCACCACATGCCAGTCCTTGATGTCTCAGAATCCCTACGGCGATCGGAATCTGTCACTCGGTCTCACTCT CCAAATACCCCTGAGGTGTGCTTGCCCAACTTCCAACCAGAATGCTTCAGGGATCAACCACTTGCTCACCTACATGGTCACTTGGGGCGATTCCATCTCT TCCATTGCCCAGCTGTTTGGCGTTGACAAGCAGAGGGTACTTGATGCAAACAAGCTGTCTTCCTCCAATATCATTTTCCCCTTCACTCCGATTCTGGTTC CTCTGCCCACTGAGCCCACCAAAATTGAACAGCCATCGGCAGCCCCTCCGCCTGCCGCACCATCTCCGCAGACTCCCAATGTTTCCGTTGGGGGCTCTTC CGATCACAAAGCCTTGTATGTGGGTGTTGGGATAGGAGCTGCTTTCCTCATTCTTTTATTTGCTGCGTTTGGATTTCTGTTTTGGCACCGCAAATCTCGT AAGCAACAGAAGCCTGTCTCCACTTCAGAACCCGAAACGCTGCCATCAGTCTCTACTGATTTCACTGTACTCCCAGTCTCCAACAACAAATCTTGGTCTC TCTCTTCTCATGACGCCCGATATGCTATTGAGTCCTTGACTGTCTACAAATACGAGGACTTACAAGTGGCCACCGGGTACTTCGCCCAAGCTAATCTGAT CAAGGGCTCGGTTTATAGGGGATCTTTCAAGGGTGACACAGCCGCAGTCAAGGTTGTGAAAGGAGATGTCTCCAGCGAGATCAACATTTTGAAGATGATC AATCACTCCAACGTCGTCAGGCTCTCTGGTTTCTGCTTACATGAGGGCAACACTTACCTTGTTTATGAGTACGCCGACAATGGCTCTCTCACTGATTGGC TTCACTCTAACAACATATACCGAATTCTTGCTTGGAAGCAGAGAGTTCGGATTGCCTACGATGTGGCTGATGCCCTCAATTACCTTCACAACTACACCAA CCCGTCCTATATCCATAAGAACTTGAAGACCAGCAACATTCTTTTGGATGCCAACTTGAGAGCCAAGGTTGCTAATTTCGGCTTGGCAAGAACACTGGAA AATGGCCAAGATGGTGGACTGCAACTGACAAGACATGTGGTAGGCACTCAAGGTTATTTGGCCCCCGAGTACATCGAGAATGGAGTTATCACCCCGAAAT TAGATGTTTTTGCTTTCGGGGTTGTGATGTTGGAGCTCTTATCTGGGAAGGAAGCAGCTGCTACAGCTATTGACAAGATTGCAGGAGACGACTTGCTCTC TGTAATGATAATGCGTGTGCTTGAGGGGGACAATGTGAGAGAGAAACTCTCTGCCTTCCTGGACCCTTGCCTAAGAGACGAGTACCCCTTGGATCTAGCT TTCTCAATGGCCCAACTGGCTAAAAGCTGTGTCGAGCATGATCTCAATACACGACCTTCAATGCCTCAAGTTTTCATGATGTTGTCCAAGATCCTCTCGT CTTCGTTGGACTGGGATCCATCCGATGAGCTCAATCGATCTAGGTCTATAGACAGTGGCAGGTAG
AA sequence Show only first row Show all	>Potri.005G259600.1 pacid=42802679 polypeptide=Potri.005G259600.1.p locus=Potri.005G259600 ID=Potri.005G259600.1.v4.1 annot-version=v4.1 MDFLLLYLYVVLLLSPALVQGQQTYVANHQLDCYNNAFNETTKGFLCNGVQSSCQSYLTFRSMPPYNSPVLIAYLLGVPQSATRIASINNLSSDTATIPT NTQVVVPVNCSCYARQYYQHNSTYQLKDKSETYFSVANNTYQGLTTCQSLMSQNPYGDRNLSLGLTLQIPLRCACPTSNQNASGINHLLTYMVTWGDSIS SIAQLFGVDKQRVLDANKLSSSNIIFPFTPILVPLPTEPTKIEQPSAAPPPAAPSPQTPNVSVGGSSDHKALYVGVGIGAAFLILLFAAFGFLFWHRKSR KQQKPVSTSEPETLPSVSTDFTVLPVSNNKSWSLSSHDARYAIESLTVYKYEDLQVATGYFAQANLIKGSVYRGSFKGDTAAVKVVKGDVSSEINILKMI NHSNVVRLSGFCLHEGNTYLVYEYADNGSLTDWLHSNNIYRILAWKQRVRIAYDVADALNYLHNYTNPSYIHKNLKTSNILLDANLRAKVANFGLARTLE NGQDGGLQLTRHVVGTQGYLAPEYIENGVITPKLDVFAFGVVMLELLSGKEAAATAIDKIAGDDLLSVMIMRVLEGDNVREKLSAFLDPCLRDEYPLDLA FSMAQLAKSCVEHDLNTRPSMPQVFMMLSKILSSSLDWDPSDELNRSRSIDSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33580			Protein kinase superfamily pro...		Potri.005G259600 [exp]	0	1
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.010G010500 [exp]	1.00	0.8505
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G177900 [exp]	6.00	0.8175
AT5G59550			zinc finger (C3HC4-type RING f...		Potri.006G087800 [exp]	10.95	0.7857
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.011G071400 [exp]	15.55	0.7895
AT2G45910			U-box domain-containing protei...		Potri.001G239100 [exp]	18.97	0.7590
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258200 [exp]	21.28	0.7094
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093966 [exp]	23.23	0.8016
AT2G17705			unknown protein		Potri.005G107700 [exp]	24.10	0.8001
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258000 [exp]	25.03	0.7595
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.013G153400 [exp]	25.74	0.8056

Compare expression of checked genes

Potri.005G259600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.