Plant FIBer expression Database

Potri.005G259700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42370 613 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF09423 PhoD PhoD-like phosphatase
Representative CDS sequence
>Potri.005G259700.1 pacid=42802466 polypeptide=Potri.005G259700.1.p locus=Potri.005G259700 ID=Potri.005G259700.1.v4.1 annot-version=v4.1
ATGGGCAAGAGGAGTCGGTGGTTGTGGTGGATGGTGGTGGCTGTAGGTGTAGTAGGAGTGGTGGCGACAGGCACAAAGAGCGGCGCGGGGGAAGGGGAAG
GAAAAGGGAAAGTGTTAGAGCCTCTCGTCACCAGAATTGCCTTTGGATCCTGCGCCAACCAAAGCGCTCCTCAGCCCATTTGGAATGCCATAATTGACTT
TGATCCCCAAGTTTTTATTTGGCTGGGAGACAACGTTTATGGAGACACTAAACGTCCTTTTAAGTTATTTGGAAAGGAAAGGACTATTGGGCCTTGGAAG
AATGCTCCTAGGTTTATCCCTTCCTCCCCAAAGGAATTGGAATCCAGATACCAGAAAGCTAAGAGTAATCCCGGTTATTCTCGTCTTCGACACACTACAC
AGGTTATTGGTACCTGGGATGACCATGACTATGGATTAAATGATGCTGGAAAAGAGTTTGGTGGTAAAATCACTAACCAAAAGCTTCTCCTCGATTTCTT
AGACGAGCCTCAAGACAGTCCTCGGCGCAACCAGGAGGGTGTATATACTTCATATATGTTTGGCCCAGTGGGCAGACAAATCAAGGTCATCCTTTTAGAC
ACGAGGTACCACAGAGACCCTTTGCGCAGCGATGGAAGTGTCCTGGGAAGTTCTCAGTGGACATGGTTAGAAAAGGAGTTGAACGGACCGAAATCAGCCA
TTACCATCATTGGGTCTTCAGTGCAGGTTATATCAAATCTTTCAGCAACCACTCGCCCATTGTTTTCTTTGGAGTCCTGGGGACGTTTCCCAAAGGAAAG
GGATCGTCTTTTCAAATTGATAGCAGATACTAAGAGAGAAGGTGTCTTCTTCATCAGTGGAGATGTTCATTTTGGAGAAATTTCTAGATATGACTGTGCT
ACTGGATATCCACTATATGATGTTACTGCAAGTGGGCTTACACAAGCTGTTGAGAAAGCGGTCCCACATGTATTTAGTTTGATAGTGAGATTTGTGGCAT
GGCTGACACCAACGACAATGAGAGTGATCAGCACAAATTGCAGATTCAAGTCATGCACGTATGGTCAGCCAAATTTTGGAGCAATTGAAATTGACTGGAG
CACAACCCCAGTAACCTTGAAACTTGAGGTCAGGGACATCGTAGGGTACCCCGTCACTGGTGTAAAATTTCCATTAGTGGAATTGCAATCACGTGGCTCA
GTGCCATCAGTTAAAGCAGGGGAACATCGAAGGCATTGCTCCCTTGAAGTTAATCTGCCATGGATGATCAAATATCGCCTGGCAATTTTATTCTACTGTT
CTGTATCTGCATTGCTTCTTGCTATGATTGGGCTGGCTTATGCAGCCACATTAGCCTTCAGACTGTTCCTCCACAAATGCAAGCTAGATTGA
AA sequence
>Potri.005G259700.1 pacid=42802466 polypeptide=Potri.005G259700.1.p locus=Potri.005G259700 ID=Potri.005G259700.1.v4.1 annot-version=v4.1
MGKRSRWLWWMVVAVGVVGVVATGTKSGAGEGEGKGKVLEPLVTRIAFGSCANQSAPQPIWNAIIDFDPQVFIWLGDNVYGDTKRPFKLFGKERTIGPWK
NAPRFIPSSPKELESRYQKAKSNPGYSRLRHTTQVIGTWDDHDYGLNDAGKEFGGKITNQKLLLDFLDEPQDSPRRNQEGVYTSYMFGPVGRQIKVILLD
TRYHRDPLRSDGSVLGSSQWTWLEKELNGPKSAITIIGSSVQVISNLSATTRPLFSLESWGRFPKERDRLFKLIADTKREGVFFISGDVHFGEISRYDCA
TGYPLYDVTASGLTQAVEKAVPHVFSLIVRFVAWLTPTTMRVISTNCRFKSCTYGQPNFGAIEIDWSTTPVTLKLEVRDIVGYPVTGVKFPLVELQSRGS
VPSVKAGEHRRHCSLEVNLPWMIKYRLAILFYCSVSALLLAMIGLAYAATLAFRLFLHKCKLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42370 Calcineurin-like metallo-phosp... Potri.005G259700
[exp]
0 1
AT2G17870 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN ... Potri.002G086900
[exp]
1.00 0.7797
AT2G27310 F-box family protein (.1) Potri.005G208200
[exp]
2.00 0.7294
Potri.001G015450
[exp]
2.82 0.6859
AT3G47390 PHS1 PHOTOSENSITIVE 1, cytidine/deo... Potri.019G054000
[exp]
7.14 0.6954
AT1G09815 POLD4 polymerase delta 4 (.1) Potri.019G042900
[exp]
14.96 0.6534
AT5G58200 Calcineurin-like metallo-phosp... Potri.006G188200
[exp]
19.20 0.6489
AT2G34900 GTE1, GTE01, IM... IMBIBITION-INDUCIBLE 1, GLOBAL... Potri.001G073800
[exp]
22.18 0.6368
AT3G08890 Protein of unknown function, D... Potri.006G104000
[exp]
23.95 0.6305
AT5G27320 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/... Potri.013G028700
[exp]
26.64 0.6409
AT1G50420 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) Potri.009G048700
[exp]
42.04 0.6138 Pt-SCL3.1

Potri.005G259700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.