Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76650 156 / 2e-48 CML38 calmodulin-like 38 (.1.2.3) AT1G76640 149 / 5e-46 Calcium-binding EF-hand family protein (.1) AT5G42380 149 / 2e-45 CML39, CML37 CALMODULIN LIKE 39, calmodulin like 37 (.1) AT3G50770 140 / 3e-42 CML41 calmodulin-like 41 (.1) AT3G01830 97 / 1e-25 Calcium-binding EF-hand family protein (.1.2) AT1G24620 97 / 3e-25 EF hand calcium-binding protein family (.1) AT1G73630 89 / 3e-22 EF hand calcium-binding protein family (.1) AT1G18210 87 / 1e-21 Calcium-binding EF-hand family protein (.1.2) AT1G66400 85 / 7e-21 CML23 calmodulin like 23 (.1) AT5G37770 85 / 9e-21 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G001400 [exp] 288 / 2e-100 AT5G42380 160 / 6e-50 CALMODULIN LIKE 39, calmodulin like 37 (.1) Potri.001G332900 [exp] 167 / 2e-53 AT1G76650 115 / 2e-33 calmodulin-like 38 (.1.2.3) Potri.005G128100 [exp] 143 / 3e-43 AT3G50770 188 / 7e-61 calmodulin-like 41 (.1) Potri.002G132500 [exp] 138 / 5e-42 AT5G42380 98 / 1e-26 CALMODULIN LIKE 39, calmodulin like 37 (.1) Potri.015G093800 [exp] 138 / 6e-42 AT1G76650 101 / 8e-28 calmodulin-like 38 (.1.2.3) Potri.007G031900 [exp] 136 / 1e-40 AT3G50770 147 / 1e-44 calmodulin-like 41 (.1) Potri.008G134300 [exp] 101 / 6e-27 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.015G039500 [exp] 100 / 1e-26 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.010G107100 [exp] 99 / 1e-25 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022343 [exp] 145 / 1e-44 AT1G76650 132 / 7e-40 calmodulin-like 38 (.1.2.3) Lus10032734 [exp] 130 / 7e-38 AT3G50770 153 / 5e-47 calmodulin-like 41 (.1) Lus10018845 [exp] 104 / 7e-26 AT3G12340 114 / 3e-29 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10001775 [exp] 96 / 3e-25 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10018012 [exp] 95 / 2e-24 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10004330 [exp] 93 / 5e-24 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10028913 [exp] 92 / 8e-24 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10014050 [exp] 86 / 5e-21 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10027701 [exp] 87 / 8e-21 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10019863 [exp] 86 / 1e-20 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.005G259900.1 pacid=42803574 polypeptide=Potri.005G259900.1.p locus=Potri.005G259900 ID=Potri.005G259900.1.v4.1 annot-version=v4.1 ATGAAGTCACACTCAGTTTCATCCTCACCTTCATCTTCACCTTCCGGCAACTCATCTCCTCTTGCAAGATTACGGCGTAAACTATCTCCCCGGAAACCCG ACAATAACCACCCAGTTTCTCTTCCAGCTCCCACAAACGTTAATAACTCGACTAGTGCTATTAATGTAATTGGAAACAACCAGCTACAAAGGGTCTTCAA TTACTTTGACGAAGATGGAGATGGAAGGATATCTCCTGCTGAGTTGCGGAGCTGTATTACTACTGTTGGAGGTCAGCTTTCCATCGAGGAAGCTGAGGCC GCCGTCAGCTTCTCTGATATGGATGGAGATGGGTTGTTGGGATTCCAGGATTTCCAATGCTTGATGGCAGGGAGTGCTTCAGAGGAGGAGAAGACAGAAG AGCTCAGACAGGCTTTTGGAATGTACGAGACTGAGCCTGGCTCAGGCTGCATCACTCCTACCAGCCTGAAGAGGATGTTGAGTCGACTGGGGAAGTCTAG GTCCATCAACGACTGCAAGGCTATGATTCGTACCTTTGACCTTAATGGAGACGGTGTCCTTAGCTTCCACGAGTTTTCTGTCATGATGCGCTAG
AA sequence Show only first row Show all	>Potri.005G259900.1 pacid=42803574 polypeptide=Potri.005G259900.1.p locus=Potri.005G259900 ID=Potri.005G259900.1.v4.1 annot-version=v4.1 MKSHSVSSSPSSSPSGNSSPLARLRRKLSPRKPDNNHPVSLPAPTNVNNSTSAINVIGNNQLQRVFNYFDEDGDGRISPAELRSCITTVGGQLSIEEAEA AVSFSDMDGDGLLGFQDFQCLMAGSASEEEKTEELRQAFGMYETEPGSGCITPTSLKRMLSRLGKSRSINDCKAMIRTFDLNGDGVLSFHEFSVMMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Potri.005G259900 [exp]	0	1
AT5G59820	C2H2ZnF	ZAT12, RHL41	RESPONSIVE TO HIGH LIGHT 41, C...		Potri.009G027700 [exp]	1.41	0.9541	RHL41.1
AT3G57450			unknown protein		Potri.006G050800 [exp]	5.19	0.9118
					Potri.016G004500 [exp]	7.00	0.9057
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Potri.009G101900 [exp]	7.07	0.9080
AT1G21010			unknown protein		Potri.005G259100 [exp]	11.48	0.9100
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Potri.001G409500 [exp]	12.40	0.8877
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Potri.004G141200 [exp]	12.96	0.9208
AT4G12410			SAUR-like auxin-responsive pro...		Potri.003G113100 [exp]	13.96	0.8871
					Potri.005G087400 [exp]	20.19	0.8876
AT5G42380		CML39, CML37	CALMODULIN LIKE 39, calmodulin...		Potri.002G001400 [exp]	20.49	0.8688

Compare expression of checked genes

Potri.005G259900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.