Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76660 453 / 1e-157 unknown protein AT5G52430 116 / 2e-28 hydroxyproline-rich glycoprotein family protein (.1) AT1G63720 105 / 9e-25 unknown protein AT4G25620 80 / 6e-16 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G001100 [exp] 734 / 0 AT1G76660 487 / 1e-170 unknown protein Potri.012G144200 [exp] 140 / 2e-36 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G102200 [exp] 137 / 8e-36 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G129400 [exp] 120 / 9e-30 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016050 [exp] 500 / 4e-176 AT1G76660 438 / 5e-152 unknown protein Lus10025171 [exp] 480 / 7e-165 AT1G76660 420 / 1e-141 unknown protein Lus10039253 [exp] 139 / 1e-35 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1) Lus10027498 [exp] 136 / 3e-34 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1) Lus10024642 [exp] 129 / 1e-32 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1) Lus10032276 [exp] 127 / 6e-32 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1) Lus10017503 [exp] 101 / 9e-23 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1) Lus10028779 [exp] 100 / 5e-22 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G260000.1 pacid=42803813 polypeptide=Potri.005G260000.1.p locus=Potri.005G260000 ID=Potri.005G260000.1.v4.1 annot-version=v4.1 ATGGGGTCGGAGCAGAATAGATTCCCTCAGCAGCAACAGCAGCAGGAACAACAGAGCAAGAGATGGGGAAAATGCTGGGGGGCATTGTCTTGTTTCAGTG TGCAGAAAGGTGGAAAGCGCATTATGCCTGCATCTCGTATTCCTGAGGGCAATGCATCAGCAGCCCAACCAAATGGACCTCAACCTGTTGGCCTAACCAA TCAAGCTACAGCGCTAGCTCCGTCACTTCTAGCTCCCCCATCTTCACCAGCCTCATTTACAAATTCTGCTCTCCCATCAACTGCTCAGTCTCCTAGCTGC TTCCTTTCTGCTAATTCACCTGGGGGTCCTTCATCCACAATGTTTGCCACTGGACCTTATGCTCATGAAACCCAACTGGTTTCTCCTCCTGTCTTCTCAA CCTTCACAACAGAGCCGTCTTCTGCTCCTCTTACACCCCCACCAGAGCTGGCTCACTTAACTACACCCTCTTCCCCAGATGTTCCTTTTGCTCAATTCCT TACATCATCTAGGGATCTCAAAAGTGCTGAAAAGAACAATTACATCGTTGCATCTGATCTTCAAGCAACATATTCACTCTATCCTGGAAGTCCTGCAAGC AGTCTCAGATCACCAATTTCTAGGACTTCAGGTGACTGTTTGTCAGCATCTTTTCCCGAACGAGATTTCCCCACACACTGGGATCCGTCAGTTTCTCCCC AAAATGGAAAATATTCAAGGAATGGACCTGGCAGGCATTTTGGGCCCGAGACTGCCGGTGCCTCCATGGTGTCGCAAGATTCAAATTTCTTCTGTCCTGC TACATTTGCACAGTTCTACCTGGACCATAACCCACCATTTCCTAATACTGGTGGGAGATTAAGTGTTTCCAAGGATTCGGATGCTTATCCTGCTGGTGGA AATGGACACCAGAACAGGCATAATAAAAGTACCAAGCAAGATGCAGAAGAATTAGAAGCTTACAGAGCATCCTTTGGGTTCAGTGCTGATGAGATTATCA CTACTCCTCAATATGTAGAGATTTCTGATGTAACGGAGGACTCATTTAGCATGACTCCTTTTACTTCAACCAAACCTACAATGGAAGAAAGCGTGGAAGC CTTGTCTCCAGATGAGGGCCAAAAAGCATATGCAAACTATGAAGATCCAAAATCAAGACGGCAACCTGGGAATATATCTGGATCAAGAACACCCGGCAAC CATGTTGTGACTGATGATGACATATTCTCAAAGATGGCATCATCCAAAATTAGCCGGAAATATCATTTGGGAATATCGACCTCTGATGCAGAAATTGACT ACAGAAGGGGAAGAAGCTTAAGAGAAGGCAAAGGAGATTTTGCATGGCATGACTAG
AA sequence Show only first row Show all	>Potri.005G260000.1 pacid=42803813 polypeptide=Potri.005G260000.1.p locus=Potri.005G260000 ID=Potri.005G260000.1.v4.1 annot-version=v4.1 MGSEQNRFPQQQQQQEQQSKRWGKCWGALSCFSVQKGGKRIMPASRIPEGNASAAQPNGPQPVGLTNQATALAPSLLAPPSSPASFTNSALPSTAQSPSC FLSANSPGGPSSTMFATGPYAHETQLVSPPVFSTFTTEPSSAPLTPPPELAHLTTPSSPDVPFAQFLTSSRDLKSAEKNNYIVASDLQATYSLYPGSPAS SLRSPISRTSGDCLSASFPERDFPTHWDPSVSPQNGKYSRNGPGRHFGPETAGASMVSQDSNFFCPATFAQFYLDHNPPFPNTGGRLSVSKDSDAYPAGG NGHQNRHNKSTKQDAEELEAYRASFGFSADEIITTPQYVEISDVTEDSFSMTPFTSTKPTMEESVEALSPDEGQKAYANYEDPKSRRQPGNISGSRTPGN HVVTDDDIFSKMASSKISRKYHLGISTSDAEIDYRRGRSLREGKGDFAWHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76660			unknown protein		Potri.005G260000 [exp]	0	1
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.011G139300 [exp]	15.09	0.8039	ATMAK3.5
AT2G12400			unknown protein		Potri.018G120200 [exp]	16.27	0.7869
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032900 [exp]	16.52	0.7838
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.019G087700 [exp]	17.94	0.7667	Pt-SERK2.3
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.002G019400 [exp]	21.49	0.7896
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.007G025700 [exp]	22.64	0.7617
AT4G17640		CKB2	casein kinase II beta chain 2...		Potri.003G084900 [exp]	25.63	0.7250
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.015G026100 [exp]	26.38	0.7827
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.002G135500 [exp]	26.45	0.7876	Pt-RAB6.1
AT1G76270			O-fucosyltransferase family pr...		Potri.005G249900 [exp]	26.49	0.7627

Compare expression of checked genes

Potri.005G260000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.