Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21080 587 / 0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 551 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G77020 414 / 6e-144 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 374 / 8e-129 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 371 / 2e-127 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59725 76 / 6e-15 DNAJ heat shock family protein (.1) AT1G59980 75 / 1e-14 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G48030 74 / 3e-14 GFA2 gametophytic factor 2 (.1) AT1G28210 73 / 6e-14 ATJ1 DNAJ heat shock family protein (.1.2) AT2G22360 73 / 1e-13 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G000300 [exp] 726 / 0 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G074600 [exp] 416 / 8e-145 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 411 / 1e-142 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.009G119800 [exp] 365 / 2e-125 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 360 / 3e-123 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.001G271300 [exp] 80 / 3e-16 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 78 / 2e-15 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.010G035000 [exp] 72 / 7e-14 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 71 / 1e-13 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013198 [exp] 645 / 0 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 637 / 0 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10042774 [exp] 416 / 4e-144 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028809 [exp] 379 / 2e-130 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 377 / 6e-130 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 369 / 1e-126 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 361 / 1e-123 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10029744 [exp] 362 / 3e-123 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027634 [exp] 79 / 8e-16 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 77 / 4e-15 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF14308 [poplar] [flax] DnaJ-X X-domain of DnaJ-containing
Representative CDS sequence Show only first row Show all	>Potri.005G260400.1 pacid=42802718 polypeptide=Potri.005G260400.1.p locus=Potri.005G260400 ID=Potri.005G260400.1.v4.1 annot-version=v4.1 ATGGTAAAAGAAACAGAATACTACGACGTGCTCGGAGTCAGCCCCACGGCCACCGAGGCTGAGATAAAGAAAGCCTATTACATCAGGGCTCGGCAGGTCC ATCCAGATAAAAACCCTAATGATCCCCTTGCCGCAAAGAATTTTCAGACGTTGGGAGAGGCATACCAAGTATTAAGTGATCCTGCCCAGCGGCAAGCATA CGATGCTTATGGAAAATCTGGAATCTCAACTGAAGCAATCATTGAACCAGCAGCAATTTTTGCGATGCTTTTCGGTAGTGAGCTTTTCGTGGACTACATA GGACAGCTTGCTATGGCATCAATGGCTTCATTAGACATTTTCACAGAGGGGGAACAATTGGATACTAAAAAGTTGCAAGAGAAAATGAGGGTTGTTCAAA AGGAGAGGGAAGAAAAGCTTGCGGAAATACTGAAAGATCGACTTAATCAATATGTACAAGGCAACAAAGAGGAGTTCATTAAACATGCCGAAGCTGAAGT AGCTAGGCTCTCAAATGCAGCTTATGGTGCTGATATGTTGAACACAATTGGTTACATTTATGCAAGACAGGCAGCAAAAGAGCTTGGGAAGAAAGCGATA TATCTGGGTGTGCCATTCATTGCCGAGTGGTTTAGAAACAAAGGCCACTCTATTAAATCTCAAGTAACCGCAGCCACAGGTGCCATTGCCCTGATCCAGT TACAAGAGGACATAAAAAAGCAGCTCAGCGCAGAAGGGAACTATACTGAAGAAGAGCTTGAAGCATACATGCAATCCCACAAGAAGTTGATGACTGATTC ACTGTGGAAGCTTAATGTAGCTGATATTGAGGCCACTCTTTCCCGTGTTTGTCAGATGGTTCTTCAAGACAACAGTGTCAAGAAAGAAGAGCTTCGTGCA CGAGCCAAGGGTTTGAAAACTCTTGGTAAAATCTTCCAGAGCATGAAATCTGTCGATGGAGGTGAGGGTGAACCTGTGCTAGGTGGTTCTCTGCATAAAC TGAATGGAAGAGAACCAAGTTTCGATGCCTGTTCTCCTAGTACTTCACCAAAATCTAAAAGTCCTGAAGAGGCATCTTATAGCACATTGGCATCACAGAG CCCCTACGTGGAAGCCCCGCAATTTAATGGTGCTCAGTTTAACTACAACTTCCCAAGGCCAACGGCACCTCCTGGTGCACAGAGACATTCTTCAACAGGC AGCAACTGA
AA sequence Show only first row Show all	>Potri.005G260400.1 pacid=42802718 polypeptide=Potri.005G260400.1.p locus=Potri.005G260400 ID=Potri.005G260400.1.v4.1 annot-version=v4.1 MVKETEYYDVLGVSPTATEAEIKKAYYIRARQVHPDKNPNDPLAAKNFQTLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIEPAAIFAMLFGSELFVDYI GQLAMASMASLDIFTEGEQLDTKKLQEKMRVVQKEREEKLAEILKDRLNQYVQGNKEEFIKHAEAEVARLSNAAYGADMLNTIGYIYARQAAKELGKKAI YLGVPFIAEWFRNKGHSIKSQVTAATGAIALIQLQEDIKKQLSAEGNYTEEELEAYMQSHKKLMTDSLWKLNVADIEATLSRVCQMVLQDNSVKKEELRA RAKGLKTLGKIFQSMKSVDGGEGEPVLGGSLHKLNGREPSFDACSPSTSPKSKSPEEASYSTLASQSPYVEAPQFNGAQFNYNFPRPTAPPGAQRHSSTG SN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21080			DNAJ heat shock N-terminal dom...		Potri.005G260400 [exp]	0	1
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.016G001000 [exp]	12.96	0.7074
AT1G07990			SIT4 phosphatase-associated fa...		Potri.009G014700 [exp]	14.83	0.6754
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.017G042200 [exp]	20.39	0.6447
AT1G72880			Survival protein SurE-like pho...		Potri.001G196800 [exp]	21.16	0.6358
AT1G14630			unknown protein		Potri.010G100700 [exp]	24.49	0.6198
AT1G70750			Protein of unknown function, D...		Potri.010G109900 [exp]	29.10	0.6672
AT3G05900			neurofilament protein-related ...		Potri.005G001700 [exp]	47.05	0.5651
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G116700 [exp]	66.11	0.5749
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Potri.003G163200 [exp]	77.79	0.5855
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.008G012600 [exp]	82.70	0.5680	Pt-NTN2.3

Compare expression of checked genes

Potri.005G260400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.