Plant FIBer expression Database

Potri.006G000200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44200 221 / 2e-66 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
AT2G44195 137 / 1e-38 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G000501
[exp]
68 / 3e-14 AT2G44200 53 / 1e-09 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039128
[exp]
400 / 2e-136 AT2G44200 366 / 1e-122 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
Lus10038730
[exp]
374 / 3e-126 AT2G44200 377 / 6e-127 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10197 Cir_N N-terminal domain of CBF1 interacting co-repressor CIR
PF12542 CWC25 Pre-mRNA splicing factor
Representative CDS sequence
>Potri.006G000200.1 pacid=42770303 polypeptide=Potri.006G000200.1.p locus=Potri.006G000200 ID=Potri.006G000200.1.v4.1 annot-version=v4.1
ATGGCTTTGAAGTTTTTGAACAAGAAGGGATGGCACACGGGGAGCCTTAGGAACATAGAGAACGTGTGGAAAGCTGAGCAGAAGCACGACGCCGAACAGA
AGAAGTTGGAGGAGCTCCGCAAACAGATTCAAGATGAGCGTGAGCGTTCTGAGTTTCGTCTTCTCCAGGAGCAAGCTGGTCTTGTCCCGAAGCAGGAAAG
GTTGGAATTTCTTTATGATTCGGGATTAGCAGTTGGCAAGACCAGTGGCAGTTCCAGCGGAGGGGGGGTTGGAGTTGCGTTCAAGGCTCTTGAAGAATCC
ATTCCCGGCAGCACCACCAGCAGTAGCAACAACAACAACGCGCCATCCTCTTCTGCCCAGCAGTCGTCTGCCCCTGGAGCCTTATTCGAGGACAAGCCTC
ACTCTTCCAATGACGCTTGGAGGAAACTCCATTCCGATCCTCTCCTTTTGATTCGCCAGCGAGAACAAGAAGCCCTTGCCCGTGTCAAGAACAACCCCAT
TCAAATGGCCATGATTCGCAAATCTGTTGAAGCAAGTAAAGAGAAGGAGATGAACCATGATAGAAAGGAACACCAAAAGAAGCACAGTCATAGTAAAGGA
AAGCATCACAAGCATTCATCGAAACTGCAATCTGATTCTGAAAATGTCAGTGGTGAAGGGGAAAGACGGAGAAAGACTAGTGATCACAAGCATTCATCTT
CCAAACGACAATCTGATTCAGAAGATGTCAGAGTTGAAGGGGAAAAGAGGAGAAAAACTAGTGATAGAAGGAGTTCAAAGTATGATGAGCATCATTATAA
AGCACAAGTTGATTCAGATGGTGAGTCAAGTGAAAGAGAAAACCAGAGAGGAAGGAATAGCTATCGGGGTTCAAAATACAGAGAGCGATCTCCTCGTGGG
TACTCACACCCAAAAGCTGGAAAAAATGATGGTCAGGATACTCACAGGAAGAATCATGGCAAGTCAATGAATGAGAGGTATTCATTGGAAGGCAGGACAG
ATTTTGATGCTGATAGAAAGGGAAGGGATGCAAACAGTTCTCGTGAAGCAAGGTCTTATGCTTCTTCCGAGTCCGTTCGCTATGATTCAAACTATAAACG
CCGAAATGTCGCTTCTAAACTGACAGAAGAAGAGCGACTTGCTAAGCTACGGGAGATGCAAGTTGATGCTGAGTTGCATGAGGAGCAAAGATGGAAACGT
TTGAGGAAGGCAGAGGAAGATGATGCACGAGAAGCTACTCATACAAGCATGTTGGGTGGCAGGAATTTCCTAGATGCTGCTCATAAAAGTGTGTATGGAG
CTGAGAAGGGGGGGAGCTCAACCATTGAGGAGAGCGTCCGTCGTCGTGCACATTATTCACAAGGAAGGACTGAAGTGGGTGATGGCAATGCTTTTCGCCG
ATGA
AA sequence
>Potri.006G000200.1 pacid=42770303 polypeptide=Potri.006G000200.1.p locus=Potri.006G000200 ID=Potri.006G000200.1.v4.1 annot-version=v4.1
MALKFLNKKGWHTGSLRNIENVWKAEQKHDAEQKKLEELRKQIQDERERSEFRLLQEQAGLVPKQERLEFLYDSGLAVGKTSGSSSGGGVGVAFKALEES
IPGSTTSSSNNNNAPSSSAQQSSAPGALFEDKPHSSNDAWRKLHSDPLLLIRQREQEALARVKNNPIQMAMIRKSVEASKEKEMNHDRKEHQKKHSHSKG
KHHKHSSKLQSDSENVSGEGERRRKTSDHKHSSSKRQSDSEDVRVEGEKRRKTSDRRSSKYDEHHYKAQVDSDGESSERENQRGRNSYRGSKYRERSPRG
YSHPKAGKNDGQDTHRKNHGKSMNERYSLEGRTDFDADRKGRDANSSREARSYASSESVRYDSNYKRRNVASKLTEEERLAKLREMQVDAELHEEQRWKR
LRKAEEDDAREATHTSMLGGRNFLDAAHKSVYGAEKGGSSTIEESVRRRAHYSQGRTEVGDGNAFRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44200 CBF1-interacting co-repressor ... Potri.006G000200
[exp]
0 1
AT2G19270 unknown protein Potri.006G075000
[exp]
2.00 0.9281
AT4G10810 unknown protein Potri.002G173700
[exp]
2.82 0.8997
AT3G47940 DNAJ heat shock family protein... Potri.015G066100
[exp]
4.00 0.9127
Potri.005G009001
[exp]
5.29 0.9166
AT5G13310 unknown protein Potri.003G163100
[exp]
5.91 0.8675
AT4G10790 UBX domain-containing protein ... Potri.001G085600
[exp]
6.92 0.9139
AT1G10580 Transducin/WD40 repeat-like su... Potri.008G172800
[exp]
7.07 0.9079
AT3G15010 RNA-binding (RRM/RBD/RNP motif... Potri.011G065200
[exp]
7.14 0.8587
AT3G54540 ABCF4, ATGCN4 ATP-binding cassette F4, gener... Potri.008G003300
[exp]
8.06 0.8882 GCN4.3
AT5G16220 Octicosapeptide/Phox/Bem1p fam... Potri.017G119100
[exp]
8.48 0.8782

Potri.006G000200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.