Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44190 219 / 3e-66 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) AT3G60000 199 / 7e-59 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT3G19570 130 / 2e-32 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30710 123 / 4e-30 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT5G43160 112 / 4e-28 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT1G49890 116 / 8e-28 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT2G24070 109 / 2e-25 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G25190 81 / 3e-16 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G20815 67 / 1e-11 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G000300 [exp] 536 / 0 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.001G295800 [exp] 136 / 2e-34 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.014G017500 [exp] 135 / 5e-34 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.018G103800 [exp] 132 / 5e-33 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.006G181700 [exp] 129 / 3e-32 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.009G089800 [exp] 126 / 5e-31 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 124 / 2e-30 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.001G126000 [exp] 87 / 1e-18 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.013G146100 [exp] 70 / 2e-12 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039129 [exp] 275 / 7e-87 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10038729 [exp] 270 / 3e-85 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10014636 [exp] 131 / 5e-33 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10033792 [exp] 130 / 2e-32 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10010780 [exp] 129 / 4e-32 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010779 [exp] 129 / 5e-32 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10022176 [exp] 127 / 3e-31 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10018698 [exp] 118 / 2e-28 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10007759 [exp] 100 / 1e-24 AT5G43160 157 / 5e-48 QWRF domain containing 9, Family of unknown function (DUF566) (.1) Lus10018555 [exp] 82 / 2e-16 AT2G20815 222 / 1e-65 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [poplar] [flax] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Potri.006G000400.1 pacid=42768651 polypeptide=Potri.006G000400.1.p locus=Potri.006G000400 ID=Potri.006G000400.1.v4.1 annot-version=v4.1 ATGATGAAGCAAGAGCAGGCAACCCTAGGCCCGAATCCCCCAAATCCTCCTCCTCGGAGGCCGAGGGTGAGGGAGGTCAGTTCCAGGTTCATGTCTCCAA TTGCTTCTCCCTCCTCCTCTCTTTCCCCTCTTCCGTCCAATAAACAGCGCTCCAGCTCCTTGCAAAGGCAGCGCCGCAGCCAGGAATTGGACGCCGACTG CAGCCCGCAGCGAAAACAACAACAACAACAACAACAACAACATCATCAGCGTGCTGTGGTCAAGCTTTCCAAGGAGAACGAACCAAGATCCCATACCCAT AGTCACAGGCCCGATACCCCTACACTCAACCCCATCAACACATCCTCTTACTCTAAATTACTATTGATGCATCAACGTTCCACCTCCAACATCAACATAT CATCGGCTGCTGCGAAGCTGTTGAAATCCACTGGGATCTCCATTTCCACTGATTCCTCTTCGGATCATCACAACATCAATAATGATGTCAGAAGCTCTCT TCCTGATCTCCTCGGCGATACTGATACTAGATTTCTAGCGGAGAGAAATCTTAACAGGCTTAATAATAATAACAATCCGTGTGCTTCCCCTTGCTCCCGT TCTCTCAATTTACAGCGATCTACAAGCAGCTGCGATCCCTCCTTGTTTCATTCACTCAAATCTGCAAAGCTGCCTCCAGTGGGCCCTTGCTCCAAGATCC CTATTGATGCTTCTAGAAAAACAAAGAAAGTTTCTAGTCACCAAGAAGATGTGCAATCTCTCAAGCTGCTGCACAACCACTACCTACAGTGGAGATTTGT CAACGCAAAAGCACAGGCTTCCACACAAGCTCAGACAAGCGAAACTGAGAGAAACCTGTATTCCCTTGGTGTCAAGATAGCAGAATTATACAACTCAGTG AAAAGAAAACGCGTTGAGCTTGGCCTTCTGCAGAGAATCAAACTTCTATGGACCATCGTTGAAGCTCAAATGCCATATCTGGATGAATGGTCAGCTTTTG AAACGGATTATTCAGTATCCCTGTCAGAAGCAATTCAAGCTTTGTTGAATGCCTCACTTCAAGTTCCAATCAGTGGAAATGCTAGAGCTGATATTAGGGA GGTAGGGGAGGCATTGAACTCTGCAGCAAAATTGATGGACACAATAGCTTTTCACATTGAAAGCCTTATGCCAAAGGCTGAAGAAACAGAACATTTGATC TCAGAAGTAGCTAGGGTGACTGGAGGAGAAAGAGGTCTTATTGAAGAATGTGGGGATCTGTTGTCAGTGACATATAATTCACAGGTAAAGGAATGCAGCT TGCGAGGGCAGCTAATTCAGTTCTATCAGAGCCGTCACAATCAACAACAGGGAGAGGAGCAATAA
AA sequence Show only first row Show all	>Potri.006G000400.1 pacid=42768651 polypeptide=Potri.006G000400.1.p locus=Potri.006G000400 ID=Potri.006G000400.1.v4.1 annot-version=v4.1 MMKQEQATLGPNPPNPPPRRPRVREVSSRFMSPIASPSSSLSPLPSNKQRSSSLQRQRRSQELDADCSPQRKQQQQQQQQHHQRAVVKLSKENEPRSHTH SHRPDTPTLNPINTSSYSKLLLMHQRSTSNINISSAAAKLLKSTGISISTDSSSDHHNINNDVRSSLPDLLGDTDTRFLAERNLNRLNNNNNPCASPCSR SLNLQRSTSSCDPSLFHSLKSAKLPPVGPCSKIPIDASRKTKKVSSHQEDVQSLKLLHNHYLQWRFVNAKAQASTQAQTSETERNLYSLGVKIAELYNSV KRKRVELGLLQRIKLLWTIVEAQMPYLDEWSAFETDYSVSLSEAIQALLNASLQVPISGNARADIREVGEALNSAAKLMDTIAFHIESLMPKAEETEHLI SEVARVTGGERGLIEECGDLLSVTYNSQVKECSLRGQLIQFYQSRHNQQQGEEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Potri.006G000400 [exp]	0	1
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.018G146300 [exp]	2.82	0.8612	ACCC.1
					Potri.004G101600 [exp]	8.66	0.8662
AT1G05370			Sec14p-like phosphatidylinosit...		Potri.008G152100 [exp]	8.94	0.8101
AT4G17000			unknown protein		Potri.001G287800 [exp]	10.77	0.8828
AT1G38131			O-fucosyltransferase family pr...		Potri.005G173500 [exp]	13.96	0.8179
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.001G245300 [exp]	15.29	0.8759	SMO2.1
AT4G28430			Reticulon family protein (.1)		Potri.017G014300 [exp]	23.62	0.8752
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.018G044900 [exp]	27.47	0.7821
AT3G28200			Peroxidase superfamily protein...		Potri.001G351000 [exp]	29.10	0.8603
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Potri.005G144900 [exp]	30.00	0.8407

Compare expression of checked genes

Potri.006G000400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.