Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52155 251 / 3e-84 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G000900 [exp] 329 / 2e-114 AT3G52155 270 / 8e-92 Phosphoglycerate mutase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040405 [exp] 263 / 3e-88 AT3G52155 256 / 2e-86 Phosphoglycerate mutase family protein (.1) Lus10023521 [exp] 259 / 3e-86 AT3G52155 259 / 5e-87 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00300 [poplar] [flax] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Potri.006G000600.1 pacid=42769952 polypeptide=Potri.006G000600.1.p locus=Potri.006G000600 ID=Potri.006G000600.1.v4.1 annot-version=v4.1 ATGAATGCGAATACAACACTCACTCTAACCAACATTACCACTAGCATAAAAAACCCGTTAATGTTAACGATGAAGTTTTGTCCTTGTCCTTGCCCTTCCC CAACACCACCACCTCCGTCTCCCATTTCTTCAATCAGGTCTAGCTGCCGCCGCCGCCGCCGCCGAACAAGGTCCTTGCAACCCAGCATGGTCATACAAGA CACATCTACTACCGCCGCCTCCGCCGTGTCTGATGCTGATACTGATACTGATACTGATACTGATTCACTATCTGTTTCCCGTCGCCTTATTTTGCTTCGT CATGCTAAGAGCTCCTGGGATGACCGTTCACTTCGAGATCATGACCGGCCACTGAGTAAAAGCGGAGAGCTTGATGCTGCCAAAGTCTCTCAAAAGCTCC AACATTTGGGTTGGATACCTCAACTTATTTTGTCTAGTGATGCATTGCGAACCAAGGAAACACTTCAAATAATGCAGCAACAAGTACCAGACTTTTTGGA TGCAGAGGTTCATTTCATTTCAAGTTTCTATTCTATTGCAGCTATGGATGGTCAGACTGCCGACCATCTTCAGCAAGCTATCTGCAATTACTCAAGGGAT GACATTCTTACTGTCATGTGCATGGGGCATAATAAGGGGTGGGAGGAGGCTGCCTCTATGTTCTCTGGTGCCTCCATAGAGCTAAATACATGCAATGCTG CTTTGCTTGAAGCTGCTGGGAAATCCTGGGCAGAGGCATTTGCTTCCGCGGGACTTGGTGGGTGGAAGCTTCAGGACATTGTAAAACCAAGTGATAGCCC AAAACTTTGA
AA sequence Show only first row Show all	>Potri.006G000600.1 pacid=42769952 polypeptide=Potri.006G000600.1.p locus=Potri.006G000600 ID=Potri.006G000600.1.v4.1 annot-version=v4.1 MNANTTLTLTNITTSIKNPLMLTMKFCPCPCPSPTPPPPSPISSIRSSCRRRRRRTRSLQPSMVIQDTSTTAASAVSDADTDTDTDTDSLSVSRRLILLR HAKSSWDDRSLRDHDRPLSKSGELDAAKVSQKLQHLGWIPQLILSSDALRTKETLQIMQQQVPDFLDAEVHFISSFYSIAAMDGQTADHLQQAICNYSRD DILTVMCMGHNKGWEEAASMFSGASIELNTCNAALLEAAGKSWAEAFASAGLGGWKLQDIVKPSDSPKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52155			Phosphoglycerate mutase family...		Potri.006G000600 [exp]	0	1
AT2G39670			Radical SAM superfamily protei...		Potri.008G056500 [exp]	6.92	0.9529
AT1G67660			Restriction endonuclease, type...		Potri.010G054800 [exp]	7.34	0.9613
AT1G69200		FLN2	fructokinase-like 2 (.1)		Potri.008G097300 [exp]	8.24	0.9610
AT1G06240			Protein of unknown function DU...		Potri.019G090600 [exp]	8.94	0.9589
AT3G59040			Tetratricopeptide repeat (TPR)...		Potri.001G220300 [exp]	9.00	0.9600
AT3G06950			Pseudouridine synthase family ...		Potri.008G206200 [exp]	11.18	0.9581
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Potri.006G122100 [exp]	14.49	0.9459
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Potri.007G145700 [exp]	14.96	0.9516
AT1G12244			Polynucleotidyl transferase, r...		Potri.004G225600 [exp]	15.87	0.9447
AT5G01590			unknown protein		Potri.016G123900 [exp]	20.19	0.9515

Compare expression of checked genes

Potri.006G000600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.