Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17150 608 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G14290 449 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) AT3G23540 442 / 6e-151 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G47590 50 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1) AT3G47560 44 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G62860 44 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 43 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29840 42 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 42 / 0.0006 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001000 [exp] 858 / 0 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G029200 [exp] 444 / 2e-151 AT4G14290 680 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G200400 [exp] 432 / 1e-146 AT4G14290 672 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G227900 [exp] 52 / 5e-07 AT5G11910 363 / 5e-127 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G068000 [exp] 42 / 0.0006 AT3G47590 360 / 4e-125 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 42 / 0.0009 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039125 [exp] 644 / 0 AT4G17150 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10038733 [exp] 555 / 0 AT4G17150 469 / 1e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001114 [exp] 453 / 2e-155 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041237 [exp] 450 / 5e-154 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10021948 [exp] 436 / 4e-148 AT4G14290 674 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 420 / 9e-142 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 47 / 2e-05 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10027619 [exp] 45 / 0.0001 AT5G20520 479 / 4e-172 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10011949 [exp] 44 / 0.0003 AT5G20520 437 / 1e-155 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10013517 [exp] 43 / 0.0003 AT5G11910 351 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.006G000700.5 pacid=42770640 polypeptide=Potri.006G000700.5.p locus=Potri.006G000700 ID=Potri.006G000700.5.v4.1 annot-version=v4.1 ATGATTGGCCAGTTCATCAATTTTGTAATTCGCCCTCCCAGGGCGGATTATAACCCAGATCAGTATTTATGGGAGAAGGATTTCACTCTTGCTGGTAGAG CATACAAGAGACAAGACTTGGAGCTTACCAATGCAAGGGGTCATACCTTGCGATGCAGCCATTACCTGCCTTCATCTTTCCCTGAAGATACTCCCCTTCC TTGCGTTATATACTGCCATGGAAACAGCGGATGTAGAGCAGATGCAAATGAGGCTGCTGTAATTCTTCTTCCATCAAATATCACTGTTTTTGCTCTTGAT TTTTCGGGTTCTGGCTTATCTGATGGTGATTATGTGAGCCTTGGTTGGCATGAGAGAGATGACCTCAAAGTAGTGGTCTCGTATCTAAGAAGCAACAAAC AAATATCATGTATAGGCCTGTGGGGACGATCAATGGGTGCAGTCACTAGCCTTCTCTATGGAGCAGAAGACCCATCCATAGCTGGAATGGTGCTGGATAG TGCCTTTGCAAATTTATTTGATCTAATGATGGAACTCGTTGATGTATACAAAATCAGGCTTCCAAAATTTACTGTTAAGATGGCGGTACAGTACATGCGT TGGGTGATTCAGAAGAAGGCAAAATTTGATATTATGGATCTTAACTGCCTAAAGGTAGCACCCAAAACATTCATTCCTGCTCTATTTGGGCATGCCAGTG AGGACAAATTCATTCAACCCTGCCATGCCGACCTCATCTTTAACTCCTATGCAGGGGATAAGAACATGATAAAATTTGATGGCGATCACAACTCTTCTCG ACCGCAGTTTTATTATGACTCGGTATCCATTTTCTTCTTCAATGTCCTTCACCCTCCTCAAACTTCAGCTTCTTCAAATAAGCTTGAGAGATATTATGAT TTGGGTGATTTGAAAGTCAGTGCTGGCATGGATGAGAGCCTCTTGTATGAGATAATCACAGGCCTTCGTTCTGCCTGTACCGATGCTGCAAGTTCTTCTG TTCGTCCTAGCATTCCAACCACGAAATCTGTGAGCGAACTTCTTTCTGAAGTTGCACCATTAGCTAATATAGTGGACTCCATGGCTAGTGAAAATGCTGG GCTTTGCAGCGATGAGCCATCAAATTTGCAGGGAAAACCAAATGGCCAGAGCGAGTGTTGCTCTTATACAAGCTCTAATAGAGAGAGTTGGGGAAGATGC TCCTCCCTAGGAAGCAGCGATGAAGAATCTCCTGCTGAATGCAGAACTGTGGACAATAGCCATGAGATGACTCTAAAGGCATCTGCAACACCTCTAGGAA GCATACAGCAAAAATCCCCAGTCCCAACAAAAGAGGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGCTCTTACAGTGCCAAAGAAGCTCAAGGGTGA GAAATTTGAAAAGCTTGAGGCCTTCAGCAAACGTCTACGCCATTGCATTCTAAGGAGGGTAAACCATCACAGGCATCGTTCTTCATGA
AA sequence Show only first row Show all	>Potri.006G000700.5 pacid=42770640 polypeptide=Potri.006G000700.5.p locus=Potri.006G000700 ID=Potri.006G000700.5.v4.1 annot-version=v4.1 MIGQFINFVIRPPRADYNPDQYLWEKDFTLAGRAYKRQDLELTNARGHTLRCSHYLPSSFPEDTPLPCVIYCHGNSGCRADANEAAVILLPSNITVFALD FSGSGLSDGDYVSLGWHERDDLKVVVSYLRSNKQISCIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFANLFDLMMELVDVYKIRLPKFTVKMAVQYMR WVIQKKAKFDIMDLNCLKVAPKTFIPALFGHASEDKFIQPCHADLIFNSYAGDKNMIKFDGDHNSSRPQFYYDSVSIFFFNVLHPPQTSASSNKLERYYD LGDLKVSAGMDESLLYEIITGLRSACTDAASSSVRPSIPTTKSVSELLSEVAPLANIVDSMASENAGLCSDEPSNLQGKPNGQSECCSYTSSNRESWGRC SSLGSSDEESPAECRTVDNSHEMTLKASATPLGSIQQKSPVPTKEEKKKKKKKKKKALTVPKKLKGEKFEKLEAFSKRLRHCILRRVNHHRHRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.006G000700 [exp]	0	1
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.013G161200 [exp]	6.24	0.6904
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.006G105800 [exp]	6.48	0.7423	WAVE4.1
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Potri.003G107700 [exp]	10.86	0.7470
AT5G07740			actin binding (.1)		Potri.012G067900 [exp]	14.42	0.7320
AT4G03130			BRCT domain-containing DNA rep...		Potri.014G135520 [exp]	14.59	0.6670
AT5G47020			unknown protein		Potri.003G086200 [exp]	18.70	0.7338
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	18.97	0.7101	NTN2.2
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	19.79	0.6760
AT1G08390			unknown protein		Potri.002G256001 [exp]	23.87	0.7387
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	24.89	0.7225

Compare expression of checked genes

Potri.006G000700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.