Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54780 148 / 8e-38 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT2G38970 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60710 145 / 7e-37 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 142 / 7e-36 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 116 / 3e-27 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 110 / 4e-25 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 93 / 1e-19 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G65683 85 / 4e-17 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G13490 43 / 0.0002 RING/U-box superfamily protein (.1) AT1G15100 41 / 0.0007 RHA2A RING-H2 finger A2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001300 [exp] 803 / 0 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 153 / 1e-39 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 147 / 2e-37 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 140 / 5e-35 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 135 / 1e-33 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 134 / 3e-33 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 111 / 1e-25 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.007G086300 [exp] 44 / 5e-05 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.005G081200 [exp] 43 / 0.0001 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041321 [exp] 151 / 1e-38 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 146 / 5e-37 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 145 / 1e-36 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 142 / 1e-35 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 139 / 1e-34 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 119 / 3e-28 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 92 / 4e-20 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 86 / 2e-17 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 71 / 3e-13 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10039634 [exp] 58 / 1e-08 AT2G22680 268 / 8e-83 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G000900.1 pacid=42767784 polypeptide=Potri.006G000900.1.p locus=Potri.006G000900 ID=Potri.006G000900.1.v4.1 annot-version=v4.1 ATGGGGGTAGGAGCAGCGTCCTCCAAGCTGAAAAGGGCAGCTAAGAAAATGGTGGTGGCTGCATGCACCTCCTTCTCTTCCAGAAAGCCACCTGCTCTTG CTGATCCTTCTGCTTCCCTTCATACCAACTCTATCAATATCTCGGATTCTAGCCTAGCAACGTTTCCAACAAGGACAAATAATAGCTTCTCAGGGGAAGG GGAAGGGGAAGATGATGATGATGATGAAGAAGAAGAAGAATCCAACACCATCATTAGCAATAAAAATAACAACAACGTGGCTTCTAAGAACTTGTGCGCA ATATGTCTTGATCCTCTGAGTTACAGCACAAGCAACAGCCCAGGGCAGGCCATATTCACAGCCCAGTGCCGTCATGCATTCCACTTTGCCTGCATCTCAT CCAATGTCCGCCATGGTAGTGTCACCTGCCCCATCTGCCGTGCTCGTTGGACGCAGCTTCCCCGCAACCTAAATATGCCTTGTTCCCTCTCCTGCAACCA AACTGACCCCATTCTCCAAATCCTTGATGATTCCATTGCCAACTTCCGGGTCCATAGGCATTCTTTCCTACGCTCTGCCCGTTATGATGATGATGACCCC ATAGAACCTGATCAGACTCCCAATTATCCCCGTCTAGACTTCTCTATAGTGCCAATCCCATTGACAATCTTTCACCATCCTCGCACACAACATTATCAGC ACCACCACAATTTAACAGCAGGTTCCTCATTCTTTTCACACCCACCCGCTTCTTATGCATGCACCTCCTCATCGAATAGGATATCTACTGCTGCCTATCT CTCAGTAAAGTTGGCAAATCAACGACCAACAGATTTAATTCTGGTTGCAAGCCCCAATGGGCCACATCTTAGGCTTCTCAAGCAATCGATGGCATTGGTG GTTTTTTCTCTCCGACCCATTGATCGTTTGGCTATTGTTACTTACTCTTCAGCTGCAGCCCGTGTGTTCCCTTTAAGACGCATGACGTTCTACGGTAAGC GAACAGCCTTACAAGTCATTGACCGCCTTTATTTTATGGGACAAGCAGACCCAATTGAAGGTCTCAAAAAAGGAATAAAAATACTAGAGGATCGTGCACA CAAGAATCCACAGTCTACTATCTTGCATCTCTCTGATAGTCCAACAAGATCATATCATACTATCAATATGCAAGTTCCTATTCCCATCCACCGGTTTCAT GTGGGATTTGGCTTTGGCACTTCAAATGGATTTGTCATGCATGAATTTGAAGAGTTCTTGGCAAGAATGCTAGGAGGTGTGATTAGAGACGTCCAGTTGA GAATAGGGGATGAAGCCAGGATTACAAGGCTCGGAGAGCTACGGGGAGGTGAAGAAAGAAGAATTGTGTTGGAATTGGGCGAGTCAAATTATGTTAGTGT AGGATATAGCTACATTGATGGCGGAGTTGGTGAATGCAACAGAACAGGGGAAACTGTGGTGACTCTAGGGGAAAAATGGGAAGCAAATGAGGATGGCAGA GAAGCTGTAGCAGGGAGGGACTCCAGCAGTATATTTGGTGGCAGGAGTAGCAGTGTTGAAAGTTGGGATTACCATGACCCTTACATGGCTAGAAGATGGG CTAAACATTTGCATGGCTATAGGATTTGA
AA sequence Show only first row Show all	>Potri.006G000900.1 pacid=42767784 polypeptide=Potri.006G000900.1.p locus=Potri.006G000900 ID=Potri.006G000900.1.v4.1 annot-version=v4.1 MGVGAASSKLKRAAKKMVVAACTSFSSRKPPALADPSASLHTNSINISDSSLATFPTRTNNSFSGEGEGEDDDDDEEEEESNTIISNKNNNNVASKNLCA ICLDPLSYSTSNSPGQAIFTAQCRHAFHFACISSNVRHGSVTCPICRARWTQLPRNLNMPCSLSCNQTDPILQILDDSIANFRVHRHSFLRSARYDDDDP IEPDQTPNYPRLDFSIVPIPLTIFHHPRTQHYQHHHNLTAGSSFFSHPPASYACTSSSNRISTAAYLSVKLANQRPTDLILVASPNGPHLRLLKQSMALV VFSLRPIDRLAIVTYSSAAARVFPLRRMTFYGKRTALQVIDRLYFMGQADPIEGLKKGIKILEDRAHKNPQSTILHLSDSPTRSYHTINMQVPIPIHRFH VGFGFGTSNGFVMHEFEEFLARMLGGVIRDVQLRIGDEARITRLGELRGGEERRIVLELGESNYVSVGYSYIDGGVGECNRTGETVVTLGEKWEANEDGR EAVAGRDSSSIFGGRSSSVESWDYHDPYMARRWAKHLHGYRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54780			Zinc finger (C3HC4-type RING f...		Potri.006G000900 [exp]	0	1
AT2G30230			unknown protein		Potri.013G153100 [exp]	4.58	0.8129
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Potri.015G094800 [exp]	6.00	0.8464
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032600 [exp]	13.96	0.8102
AT1G80870			Protein kinase superfamily pro...		Potri.003G183100 [exp]	15.09	0.8391
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.015G118000 [exp]	27.65	0.7808
AT2G22795			unknown protein		Potri.007G008600 [exp]	30.00	0.8087
AT1G55535			unknown protein		Potri.001G001400 [exp]	31.81	0.7463
AT5G09880			Splicing factor, CC1-like (.1)		Potri.007G009800 [exp]	34.59	0.7805
					Potri.001G306100 [exp]	35.69	0.7888
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Potri.012G055700 [exp]	38.18	0.7664

Compare expression of checked genes

Potri.006G000900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.