Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47780 776 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 581 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 518 / 2e-177 GAUT3 galacturonosyltransferase 3 (.1.2) AT1G18580 423 / 2e-142 GAUT11 galacturonosyltransferase 11 (.1) AT2G46480 423 / 2e-142 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G25140 420 / 1e-140 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 410 / 8e-137 GAUT9 galacturonosyltransferase 9 (.1) AT2G20810 406 / 8e-136 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT2G30575 406 / 1e-134 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 404 / 4e-134 GAUT6 galacturonosyltransferase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001700 [exp] 931 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 581 / 0 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 577 / 0 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 536 / 0 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.005G218900 [exp] 445 / 7e-150 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.004G111000 [exp] 429 / 4e-144 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 424 / 2e-142 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.002G246500 [exp] 420 / 9e-141 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.019G108900 [exp] 414 / 1e-138 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038739 [exp] 798 / 0 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 599 / 0 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 589 / 0 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 585 / 0 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 544 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 513 / 7e-164 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024859 [exp] 441 / 2e-148 AT1G06780 630 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10018554 [exp] 438 / 4e-148 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10018773 [exp] 432 / 5e-145 AT1G06780 639 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10007979 [exp] 423 / 4e-142 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.006G001100.6 pacid=42768363 polypeptide=Potri.006G001100.6.p locus=Potri.006G001100 ID=Potri.006G001100.6.v4.1 annot-version=v4.1 ATGGCTATTTCTTTATCTTTATTTGCCATTGGAATTCTATATACTGATAACCACTCCAAGACCATTCTAACTGACAAAGATTTGCAGTTGCCTGATACAG GTAGAGCATTATCTGCCACTGATGAGGATGCTCAATCTCGGAAGGATGATATCATCAAACAGGTCATTCAGAGCGCTAATCAGGAAAAGGAGGAGACCCG GACAGACAGGGGAGCTGATCAGGAAAGCCACCAGCTTAAGCAACAATCTGCTTTAAACTCAGACAAAGTTGGTGAGAAGGATGCTTTGTTAACTAAAACC AACAAGCAGACAGATCAATCACCTATGCCAGCTGCTTGGGAGCGGCAGCTCAGGGATCGGCTTATCAAGGCAAGTGTGTACCTGTCCCTTCCAGCCACGA AGAACAATCGCCGCTTTACAAGGGAGCTTCGAATGCGGATAAAGGAAGTTCAACGCGTACTTGGAGATGCAATCAAAGATTCTGATATGCCAAAGAATGC CTATGAAAAATGGAAGGCAATGGACCAATTGTTGGAAAAGGGCAAGCAAATGCAGTATGAAAGTGCTAACGAGGTAAAGAAGCTTCGGGCAATGCTCCAC TCGACAGAAGAACAACTCCGAGTGCATAAGAAGCAGACCATGTCCTTTGCTACGATGGTAGAGAAGCTTCGGGCAATGCTCCACTCGACAGAAGAACAAC TCCAAGTGCATAAGAAGCAGACCATGTTCTTAACGCAATTAACTGCAAAGACGCTTCCTAAAGGGTTACACTGTCTTCCATTGCGCCTGACAACTGAGTA TTACAATTTGAATTCTTCGGAACAGCAATTTCCAAATCAAGAGATATTGGACAACCCTTTGCTTCACCATATTGCACTATTCTCGGATAATGTTTTGGCG GCAGCAGTGGTTGTAAACTCTACTGTCACCAACTCTAAGCACCCTTCGAAGCTTGTTTTCCACCTTGTTAGTGATAGACTCAGCTATGCGGCAATGAGGA TGTGGTTTCTAGTAAATCCACCAGGCAAAGCCACTATTCAGGTCCAGAACATTGACGAATTTACATGGTTAAATTCAAGTTATAGTCCTGTTCTGAAGCA GTTGCATTCTCAGTCAATGATTGATTATTACTTCCGGGCACATAGTGCCAATTCTGATTCGAATTTGAAGTACCGGAACCCAAAGTACTTGTCCATCCTG AACCATCTTCGCTTTTACCTGCCAGAGATTTTCCCAAAGCTCAACAAGGTGTTATTCTTAGATGATGATATAGTGGTGCAGAAGGATCTTACTGGCCTTT GGTCCCTTGATTTGAAGGGTAAGGTGAATGGTGCAGTAGAGACCTGTAGAGAAAGCTTTCATCGCTTTGATACATATCTCAACTTCTCAAATCCTCTTAT ATCAAATAATTTCGATCCCCGCGCTTGTGGATGGGCATATGGAATGAACTTGTTTGATTTGGAGGAATGGAAGAGGCAAAATATCACTGATGTATATCAT TCATGGCAGAAGCTGAACCATGACAGACAATTATGGAAGTTGGGGACTCTGCCACCTGGCCTCATTACTCTTTGGAAACGGACTCATCCCCTTGATCGAC GTTGGCATGTTCTGGGCCTTGGCTATAACCCCAATGTCAGCCAAATAGAAATTGAACGAGGTGCTGTTATACATTATAATGGCAACATGAAACCATGGCT TGAGATAGGCATACCCAAGTATCGAAAATACTGGGCAAAATACGTTGATTATGTTAATGTTTATTTGCGAGAGTGCAACATCAATCCATAG
AA sequence Show only first row Show all	>Potri.006G001100.6 pacid=42768363 polypeptide=Potri.006G001100.6.p locus=Potri.006G001100 ID=Potri.006G001100.6.v4.1 annot-version=v4.1 MAISLSLFAIGILYTDNHSKTILTDKDLQLPDTGRALSATDEDAQSRKDDIIKQVIQSANQEKEETRTDRGADQESHQLKQQSALNSDKVGEKDALLTKT NKQTDQSPMPAAWERQLRDRLIKASVYLSLPATKNNRRFTRELRMRIKEVQRVLGDAIKDSDMPKNAYEKWKAMDQLLEKGKQMQYESANEVKKLRAMLH STEEQLRVHKKQTMSFATMVEKLRAMLHSTEEQLQVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEILDNPLLHHIALFSDNVLA AAVVVNSTVTNSKHPSKLVFHLVSDRLSYAAMRMWFLVNPPGKATIQVQNIDEFTWLNSSYSPVLKQLHSQSMIDYYFRAHSANSDSNLKYRNPKYLSIL NHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSLDLKGKVNGAVETCRESFHRFDTYLNFSNPLISNNFDPRACGWAYGMNLFDLEEWKRQNITDVYH SWQKLNHDRQLWKLGTLPPGLITLWKRTHPLDRRWHVLGLGYNPNVSQIEIERGAVIHYNGNMKPWLEIGIPKYRKYWAKYVDYVNVYLRECNINP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Potri.006G001100 [exp]	0	1
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.006G270500 [exp]	2.44	0.7973
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082400 [exp]	24.89	0.7030
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Potri.014G021800 [exp]	27.49	0.6591
AT2G39435			Phosphatidylinositol N-acetygl...		Potri.010G211700 [exp]	29.08	0.7170
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.014G070000 [exp]	29.24	0.7058
AT1G67420			Zn-dependent exopeptidases sup...		Potri.010G060500 [exp]	29.29	0.6356
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082700 [exp]	31.22	0.6962
					Potri.010G173050 [exp]	32.24	0.7246
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.011G169600 [exp]	33.22	0.6643
AT5G13500			unknown protein		Potri.009G070000 [exp]	33.70	0.6356

Compare expression of checked genes

Potri.006G001100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.