Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24000 798 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 511 / 3e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 513 / 6e-174 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 495 / 2e-168 MEF22 mitochondrial editing factor 22 (.1) AT3G13770 491 / 1e-167 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 490 / 2e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 480 / 2e-163 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 479 / 5e-161 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G14850 473 / 9e-160 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 478 / 1e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164900 [exp] 533 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 529 / 4e-178 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 512 / 3e-174 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 514 / 5e-174 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 509 / 6e-174 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 505 / 2e-172 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G053500 [exp] 499 / 6e-171 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.013G152000 [exp] 502 / 2e-170 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.001G322100 [exp] 499 / 2e-170 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039117 [exp] 845 / 0 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 839 / 0 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 510 / 2e-172 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006123 [exp] 505 / 2e-172 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 491 / 1e-167 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 494 / 4e-167 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 489 / 2e-166 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012206 [exp] 488 / 3e-166 AT5G52630 786 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10040504 [exp] 486 / 2e-165 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 490 / 3e-165 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.006G001200.1 pacid=42768393 polypeptide=Potri.006G001200.1.p locus=Potri.006G001200 ID=Potri.006G001200.1.v4.1 annot-version=v4.1 ATGGAGCTTATACGACAGCAATGCAAAAACAATGCAGGTGCAAGAGAAATCTGTCACACGTTGCTAAAGAGATGCACCCATTTGAACAAACTCAATGAAG GGAAGATTATTCATGCCCTTCTTCTCAATTCCAGATTCAGAGACGATCTTGTTATGCAAAACACCCTTCTCAACTTGTATGCGAAATGTGGTGATTTGGT TTATGCACGTAAACTGTTTGATGAAATGTCTAGTAGAGATGTTGTCACTTGGACTGCTTTGATTACTGGGTATTCTCAACATGATAGGCCGCAGGATGCG CTTCTTTTGCTCCCTGAAATGCTAAGGATTGGATTGAAACCCAATCAGTTCACTTTGGCTAGTTTGTTGAAGGCGGCTTCTGGGGTTGGGTCTACTGATG TTTTGCAGGGTAGGCAGCTTCATGGGCTTTGTTTAAGGTACGGTTATGATTCGAATGTGTATGTGAGTTGTGCTATTTTGGATATGTATGCTAGGTGCCA TCATTTGGAGGAAGCCCAGTTGATATTTGATGTTATGGTGAGCAAAAATGAGGTTTCTTGGAATGCTTTGATTGCTGGCTATGCTAGGAAGGGTCAAGGA GACAAGGCTTTTTGTTTGTTCTCGAACATGCTGAGGGAGAATGTTAAACCTACTCACTTTACCTATTCTAGTGTTCTTTGTGCTTGTGCTAGCATGGGGT CATTGGAGCAAGGGAAATGGGTTCATGCCCTTATGATAAAATGGGGTGAAAAGCTAGTAGCTTTTGTTGGAAACACTTTGCTTGACATGTATGCAAAATC AGGCAGCATTGAGGATGCAAAGAAAGTTTTTGATAGGTTGGCAAAACGGGATGTTGTTTCTTGGAATTCAATGCTTACTGGATATTCTCAACATGGACTT GGGAAGGTAGCTTTACAAAGGTTTGAAGAAATGCTGAGGACTAGAATTGCTCCTAATGATATAACATTCTTGTGTGTTCTTACTGCTTGTAGCCATGCGG GCCTTTTGGATGAAGGACGTCATTATTTTGACATGATGAAGAAATACAATGTAGAGCCACAAATTTCACATTATGTCACAATGGTTGATCTTCTTGGTCG AGCTGGACATCTTGATCGAGCCATACAATTCATAAGTGAAATGCCAATTAAACCCACTGCTGCTGTCTGGGGAGCGTTGCTGGGTGCTTGTAGGATGCAT AAGAATATGGAGTTAGGTGGTTATGCAGCTGAATGTATTTTTGAACTGGATTCTCACTATCCAGGTACCCATGTATTGCTCTATAATATATATGCATTAG CTGGTAGATGGAATGATGCTGCTAAAGTGAGAAAAATGATGAAAGAAAGTGGAGTGAAAAAGGAGCCTGCTTGTAGTTGGGTAGAGATGGAGAATGAAGT CCACGTGTTTGTGGCAGATGATGATGCCCACCCACAGAGAAGAGAGATCCATAATATGTGGGAGCAGATTAGTGATAAGATTAAGGAAATTGGTTATGTT CCAGACAGTAGCCACGTGCTTTTGTGTATGGACCAGCAGGAGAGGGAAGCAAAGTTGCAGTACCATAGCGAGAAGCTTGCTCTAGCTTTTGCACTTCTCA ACACACCTCCTGGATCCACAATCCGCATCAAGAAGAATATCAGAATTTGTGGTGATTGCCATTCAGCATTCAAGTTTGTGTCCAAGCTGGTGGAAAGGGA AATCATTGTCAGAGATACCAATCGGTTTCATCATTTTTGTGATGGCGCCTGTTCATGTGAGGACTACTGGTAG
AA sequence Show only first row Show all	>Potri.006G001200.1 pacid=42768393 polypeptide=Potri.006G001200.1.p locus=Potri.006G001200 ID=Potri.006G001200.1.v4.1 annot-version=v4.1 MELIRQQCKNNAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDA LLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQG DKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGL GKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMH KNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYV PDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.006G001200 [exp]	0	1
AT1G04840			Tetratricopeptide repeat (TPR)...		Potri.001G316500 [exp]	1.41	0.9517
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Potri.019G130300 [exp]	3.46	0.9145
					Potri.003G088350 [exp]	6.48	0.9110
AT2G33730			P-loop containing nucleoside t...		Potri.012G045800 [exp]	8.12	0.8928
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Potri.012G043700 [exp]	9.79	0.9183
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	10.00	0.8703
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Potri.004G189400 [exp]	10.48	0.8735
AT1G15060			Uncharacterised conserved prot...		Potri.008G124400 [exp]	10.95	0.8652
AT2G04620			Cation efflux family protein (...		Potri.005G110300 [exp]	12.00	0.8807	PtrMTP12
AT3G21320			unknown protein		Potri.003G045000 [exp]	12.40	0.8814

Compare expression of checked genes

Potri.006G001200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.