Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13290 1170 / 0 VCR varicose-related (.1) AT3G13300 739 / 0 VCS VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G469500 [exp] 1246 / 0 AT3G13300 1236 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G166400 [exp] 1213 / 0 AT3G13300 1203 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G002100 [exp] 1165 / 0 AT3G13300 714 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039116 [exp] 1548 / 0 AT3G13290 1233 / 0.0 varicose-related (.1) Lus10038742 [exp] 973 / 0 AT3G13300 733 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038767 [exp] 649 / 0 AT3G13300 528 / 3e-175 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039096 [exp] 208 / 3e-59 AT3G13290 131 / 2e-33 varicose-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF16529 [poplar] [flax] Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein
Representative CDS sequence Show only first row Show all	>Potri.006G001400.1 pacid=42769429 polypeptide=Potri.006G001400.1.p locus=Potri.006G001400 ID=Potri.006G001400.1.v4.1 annot-version=v4.1 ATGGCTTCACCTGGTATTCCACATCAACAAGGAGGTGGGGGGGTAATAGGAGGAGGAGGAGGAGGTTTTGATATGAATAAACTGCTTAAACCCTCTTCTG CAAATCCTATGAGTATAATGCAACCCCCAAACCAACAACAACAACAGGGTCCTTCTCCCAATAGTAACACTATCACCACCGAGAATCTCACTACCTCTCC TTCCTTCCCTCTCCCTTCCTCTTCTCCACCTTATCTAACTCCATCTTCTTCTTATCCACCTCCTACTGGCCCTTATCACCCTTTTCACCACCCTCACTAT CTCTCCCCTTACCCTCCTCCTCCTCCTCCTTTTCAGCAACTTCACAATCAGTTCCTTACTAATACTAATATCCATCACCAAAATAGACCACAGCCCATCT CTTCTTTTGCACCTCCTCCTCCTCTCTCACCTAGTAATTCAGGTGGTGCTGTTTTGATGGACATCTTGACCAATCAAAACCAACAGCAGCCACCTCTCTC CAGTAATCTTAGTGGGCCTTTCCCTTCTTATGCTTCCTCCGCTGTATCCACCGCCACCAGTGCTCCTCCTGTCCCCTCTGCCCCTCCTGTTAGTTTAGCA TCTCCGACGCAGCAATGCTGCCCTCCTCCAGTGAGGATGCTCAGCACCAAGCTCCCTAAGGGCCGGCATTTGAATGGAAACCATGTCGTGTATGATATTG ATGTGAGATTGCAAGGTGAGGTGCAGCCTCAACTTGAAGTCACTCCCATCACTAAATATGTCTCCGATCCTGGCCTTGTTCTCGGCCGTCAGATTGCTGT TAATAGGAATTACATTTGCTATGGGCTCAAGCCTGGTGCTATTCGTATCCTCAATATTAATACTGCTTTGAGATCATTGCTTCGCGGTCATAACCAGAAA GTAACAGACATGGCTTTCTTCGCCGAGGATGTTCACCTTCTGGCCAGTGCATGTGTTGATGGATGTGTTTTCATACGGAAGATCAATGAGGGCCCAGATG AGGAAGAAAAACCTCAAATTTTTGAAAGGATACTTCTTGCCCTTCACATAATAGCAGATGGAGAACTGGTCCACCCACGAGTGTGCTGGCATCCACACAA ACAAGAAATTTTGGTCGTTGCAATTGGAAACCTCATCCTGAAAATCGATACCAATAAAGTTGGAAAAGGCGCGGGATTTTCAGCTGAGCAACCTCTCGCT TGTCCTGTTGATAAGCTGATTGAAGGTGTCCAGCTTGTTGGTAAGCACGATGGCGAAGTCATTGAGTTGTCAATGTGTCAATGGATGACCACCCGTTTAG CTTCAGCTTCAACAGATGGCGTGGTCAAGATTTGGGAAGACTGTAAGGCAGTACCACTTGCAGTATTCAGACCACATGATGGTAATCCTGTAAATTCTGT GGCGTTCCTGACTGCCCCTGACCATCCTGATCACATTGTTCTTATCACTGGGGGCCCGCTGAATCAGGAACTGAAGATATGGGCCTCTGCAAGTGAGGAG GGCTGGTTGTTGCCTAGTAATGCTGAATCATGGCAGTGCAATCAGACTTTGACCTTGAAGAGTTCGGTTGAATCGAACGCTGAGGATGCATTCTTTGATC AAGTGGTAGCGCTGCCCTGTGCAGGCTTATTTCTGCTGGCAAATGCCAAGAAGAATGCCATATATGCTGTACACTTGGAATATGGGCCTTATCCTGCTGC AACCCGCATGGATTACATAGCTGAGTTTACAGTTACAATGCCTATTTTGAGTCTTACTGGAACTAGTGATAGTTTACCAAATGGAGAACATATTGTTCAG GTTTACTGTGTGCAAACACAAGCTATTCAACAATATGCGTTGAACTTGTCTCAATGCCTTCCACCACCTCTGGAGAACATGGAGTTGGAGAGAACAGAAT CTAATGTTTCTCATGCTTTCGATGCTTCTAATTCTGATGGTTCCACTATTATGGAATCTTCTCATGGAAGTAAACCCACTTATATGTCTGCAGGTAACAT CGCTTCCATACCACCAATGACTTCAAACAGTTCTGAAAATGCTCCTGCAGCAAATCATCCAGAAAGCTTATGTTCTTCTGATGTTAATAGCTCACTAGAT ATAGCTTCTTCTGGTGGGCAAACCAAGGCTACTGCATCACATAATAATGCTGACAATACCAACACTGTGCCACCCCTTCTACCGATGAGTCCAAGGTTGC CTCGAAAGTTGTCAGGTCTCCAGAGTCTGTCAAATAGCACAGATACTAGTTTGCAGCTCAGTGATCATGCTGGTGACCAGTCTGTTCCAGATTATTTGGT GGACCGCAGAATTGAAACTGTGAAGGAAAATGCAAGTGATACATCCTCTGGTGATAATTTGAGTAAGGGTGAGAAGAATGTCAAACAAACTGATATTGCA ATGGTTTCTGAAACTCCAATAATGTTTAAACACCCAACCCATCTTATAACTCCATCGGAGATATTATCCAGGGCCGTTTCTTCTGAAAATTCCCAAACCA CTCAGGGCCTGAATGTCACAGAGGCAAAGATTCAGGATGTGCTTGTGAACAATGATATTGAAAGTGCTGAAGTGGAGCTTAAAGTTGTTGGAGAGACAGG AACTGATCAAAATAATGACTTTGACTTGCCCAGAGAATCTCACACTGCTGTTGCAGAGAAGAAAGAGAAATCCTTCTACTCTCAGGCCTCAGATCTCGGC ATTCAGATGGCAAGAGATTGTTGTGTGGAAGCATATAGTGTTGGGCCAGTCCAACAAGTTGATGAAGGTAGTATTACTGAGGTACTTGATAGACCTCCTA GTGATGAAGATGAGAAGCAAGATATGACTAAAGATGTGCCTGCAAAACGTGGTGAACCAGAAACTTCTGTGGAAGTTCCCCAGCCCCCAGCCCCTACAAC TAAAGCAAAAAAACCAAAAGGGAAAAGTTCGCAAGTATCCGTTCAATCTTCCCCTTCCCCGAGTCCATTCAACTCTACTGATTCATCCAAGGAACCAGGT TGCAGTCCCTGTGCCCAATCTAGTGATGCTGCTTTACCTCAGATATTGGACATGCAGGATACACTTGATCAGTTAATGAACATGCAGAAAGAAATGCAGA AGCAGATGAATACAATGATTTCTGTCCTGGTTTCCAAAGAAGGCAAAAGACTAGAGGCATCATTGGGCCGGAGTATTGAGAAAGTTGTTAGGGCTAACAC AGATGCTCTATGGGTTCGTTTTCAAGAAGAAAACACTAAGCTTGAGAAATTAGAAAGGGACCGAATACAGCAGTTAGCAAATTTGATTACAAATTTTATA AACAAGGATTTGCCAACAGCTTTGGAGAAAACTTTAAAGAAGGAAATAGCTGCAATTGGACCTGCTGTTGCTCGTGCTATCACTCCCATTTTGGAGAAAA GCATATCATCATCTATTATGGAGTCATTCCAGAAAGGGGTGGGAGAGAAGGCAGTGAATCAGCTAGAGAAGACAGTTAGTTCAAAGCTTGAAGTTACAGT GGCCAGGCAAATCCAATCACAGTTTCAAACTTCTGGCAAGCAAGCTCTTCAGGATGCATTAAGGTCTACTCTAGAAGCCTCAATTATTCCTGCGTTTGAG ATGTCCTGCAAAGCTATGTTTGATCAAGTTGATGCCACATTTCAGAAAGAGCTTAGTAAGCATATAAATGACACTCAGCAACAGTTCAATTCCATGCATT CTCCTTTGGCCATCGCTCTGAGGGATGCTATCAATTCAGCATCATCACTCACTCAAACCTTAAGTGGAGAGCTGGCTGATGGCCAACGACAGCTCTTAGC TATGGCAGCTGCAGGTGCAAACTCAGAAGTAGGAAATCCATCAGCAAAGTTGGGCAATGGACCATTGCCTGGTTTGCATGAGATGCCCGAGGCACCTTTG GATCCAACAAAAGAATTATCAAGGTTAATAGCTGAGCGGAAGTATGAGGAAGCATTCACTGTAGCTCTGCACAGAAATGATGTCACAATAGTTTCCTGGT TATGTTCTCAGGTTGATCTACAAGGGATATTGTCCATGTCACCGCTACCACCTCTAAGCCAAGGAGTTCTGCTGGCCCTTCTACAGCAATTGGCATGTGA TATTAGTAACGAAACCTCTAGAAAGTTGGGATGGATGACAGATGTGGCTGCTGCTATAAACCCTGTGGATCCAATGATTGCAGTGCATGTAAGACCAATC TTTGAACAGGTCTACCAGATAGTTATCAATCAAAGGAGTCTACCTAGTACATCTGCTTCAGAAGCCCCAGGCATACGCCTTCTTCTGGTTGTCATAAATT CTGTGCTAAGGAGCTGTAAATGA
AA sequence Show only first row Show all	>Potri.006G001400.1 pacid=42769429 polypeptide=Potri.006G001400.1.p locus=Potri.006G001400 ID=Potri.006G001400.1.v4.1 annot-version=v4.1 MASPGIPHQQGGGGVIGGGGGGFDMNKLLKPSSANPMSIMQPPNQQQQQGPSPNSNTITTENLTTSPSFPLPSSSPPYLTPSSSYPPPTGPYHPFHHPHY LSPYPPPPPPFQQLHNQFLTNTNIHHQNRPQPISSFAPPPPLSPSNSGGAVLMDILTNQNQQQPPLSSNLSGPFPSYASSAVSTATSAPPVPSAPPVSLA SPTQQCCPPPVRMLSTKLPKGRHLNGNHVVYDIDVRLQGEVQPQLEVTPITKYVSDPGLVLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLRGHNQK VTDMAFFAEDVHLLASACVDGCVFIRKINEGPDEEEKPQIFERILLALHIIADGELVHPRVCWHPHKQEILVVAIGNLILKIDTNKVGKGAGFSAEQPLA CPVDKLIEGVQLVGKHDGEVIELSMCQWMTTRLASASTDGVVKIWEDCKAVPLAVFRPHDGNPVNSVAFLTAPDHPDHIVLITGGPLNQELKIWASASEE GWLLPSNAESWQCNQTLTLKSSVESNAEDAFFDQVVALPCAGLFLLANAKKNAIYAVHLEYGPYPAATRMDYIAEFTVTMPILSLTGTSDSLPNGEHIVQ VYCVQTQAIQQYALNLSQCLPPPLENMELERTESNVSHAFDASNSDGSTIMESSHGSKPTYMSAGNIASIPPMTSNSSENAPAANHPESLCSSDVNSSLD IASSGGQTKATASHNNADNTNTVPPLLPMSPRLPRKLSGLQSLSNSTDTSLQLSDHAGDQSVPDYLVDRRIETVKENASDTSSGDNLSKGEKNVKQTDIA MVSETPIMFKHPTHLITPSEILSRAVSSENSQTTQGLNVTEAKIQDVLVNNDIESAEVELKVVGETGTDQNNDFDLPRESHTAVAEKKEKSFYSQASDLG IQMARDCCVEAYSVGPVQQVDEGSITEVLDRPPSDEDEKQDMTKDVPAKRGEPETSVEVPQPPAPTTKAKKPKGKSSQVSVQSSPSPSPFNSTDSSKEPG CSPCAQSSDAALPQILDMQDTLDQLMNMQKEMQKQMNTMISVLVSKEGKRLEASLGRSIEKVVRANTDALWVRFQEENTKLEKLERDRIQQLANLITNFI NKDLPTALEKTLKKEIAAIGPAVARAITPILEKSISSSIMESFQKGVGEKAVNQLEKTVSSKLEVTVARQIQSQFQTSGKQALQDALRSTLEASIIPAFE MSCKAMFDQVDATFQKELSKHINDTQQQFNSMHSPLAIALRDAINSASSLTQTLSGELADGQRQLLAMAAAGANSEVGNPSAKLGNGPLPGLHEMPEAPL DPTKELSRLIAERKYEEAFTVALHRNDVTIVSWLCSQVDLQGILSMSPLPPLSQGVLLALLQQLACDISNETSRKLGWMTDVAAAINPVDPMIAVHVRPI FEQVYQIVINQRSLPSTSASEAPGIRLLLVVINSVLRSCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13290		VCR	varicose-related (.1)		Potri.006G001400 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	4.47	0.8154
					Potri.004G212900 [exp]	12.00	0.8153
					Potri.002G115501 [exp]	12.24	0.8254
AT4G27220			NB-ARC domain-containing disea...		Potri.005G061860 [exp]	20.78	0.7774
AT1G11950			Transcription factor jumonji (...		Potri.011G009700 [exp]	21.33	0.8068
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Potri.004G179000 [exp]	22.27	0.8146
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261600 [exp]	28.46	0.8124	RGA.64
AT2G16990			Major facilitator superfamily ...		Potri.009G138900 [exp]	29.93	0.7670
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.008G140400 [exp]	30.49	0.7682
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Potri.001G018300 [exp]	31.36	0.7134

Compare expression of checked genes

Potri.006G001400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.