Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59810 969 / 0 ATSBT5.4 Subtilase family protein (.1) AT2G04160 833 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 566 / 0 ARA12 Subtilase family protein (.1) AT5G45650 554 / 0 subtilase family protein (.1) AT3G14067 545 / 0 Subtilase family protein (.1) AT4G34980 532 / 4e-179 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 519 / 7e-174 Subtilase family protein (.1) AT2G05920 509 / 2e-170 Subtilase family protein (.1) AT5G51750 499 / 4e-166 ATSBT1.3 subtilase 1.3 (.1) AT5G03620 491 / 3e-163 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171600 [exp] 954 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 944 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 934 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 806 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.001G468900 [exp] 806 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.005G067200 [exp] 756 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 751 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050000 [exp] 748 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 745 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016064 [exp] 874 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 868 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 824 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 815 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039085 [exp] 813 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 803 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10023048 [exp] 686 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 685 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10014591 [exp] 639 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032096 [exp] 576 / 0 AT1G20160 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.006G001600.1 pacid=42768892 polypeptide=Potri.006G001600.1.p locus=Potri.006G001600 ID=Potri.006G001600.1.v4.1 annot-version=v4.1 ATGCGGTTCCCAAGGGTTTCAATCCTTCTGCTGCTCATCATTCTTTTCTCCTTGTTCCAGTCCCCTGCTTTTGCAATCAAAAAGTCTTATGTAGTATACT TGGGATCGCATGCACATGGTCCTCAAATTTCTAAGGTTGATCTTGATGCAGTAGCCGATTCTCATCAAGAGTTTCTTGCATCATATTTGGGAAGTAGGGA GAAGGCAAGAGATGCGATTATTTACTCGTATGACAGGCATATCAATGGCTTTGCTGCCATGCTTGAGGAGGAAGAGGCAGCTGAAATTGCACGGCATCCA AACGTCGTGTCGGTTTTCTTGAACCAGGGAAGAAAACTACACACAACACATTCATGGGATTTTATGTTATTGGAAAAGGATGGTGTTGTCGATCCCTCTT CTTTGTGGAAGAGAGCTAGATTTGGTGAAGATTCAATCATAGCCAACCTTGACACCGGTGTTTGGCCTGAGTCGCTTAGCTTTAGCGAGGAAGGAATTGG GCCCGTACCATCAAAATGGAAAGGAACATGTGAGAATGATACTGCGGTTGGAGTCCCTTGCAATCGGAAGCTTATAGGAGCTAGGTACTTCAACAGAGGT TATATTGCATATGCAGGAGGCCTCACGTCCTCTGATAATTCCGCTCGTGACAAAGATGGTCATGGAACTCATACCTTGTCAACCGCAGGCGGTAACTTTG TTCCAGGAGCAAATGTTTTTGGCTTAGGAAATGGAACTGCTAAAGGTGGTTCCCCTAAAGCTAGAGTGGCTTCCTACAAGGTGTGCTGGCCACCGGTCAA TGGCAGTGAATGCTTCGATGCAGATATCATGAAAGCCTTTGACATGGCCATACATGATGGGGTCGATGTGCTTTCGGTGTCACTTGGTGGCGAACCTACT GATTACTTCAATGATGGCCTTGCTATTGGAGCATTCCATGCCGTCAAAAATGGTATTTCTGTCGTTTGCTCCGCGGGAAATTCTGGACCAATGGATGGGA CGGTCACTAATAATGCACCTTGGATTATAACTGTTGGAGCAAGTACCTTGGATAGAGAGTTTGAAACTTTTGTAGAGTTACGTAACGGAAAGCGCCTCCA GGGCACAAGCCTTTCAAGTCCTTTGCCTGAGAAGAAATTCTATCCCCTCATCACCGGGGAACAAGCCAAGGCTGCCAATGCATCTGCAGCAGACGCCTTG TTGTGTAAGCCTAAATCACTGGATCATGAGAAAGCCAAGGGTAAAGTTGTGGTTTGTCTTAGAGGAGAAACTGGTAGAATGGATAAGGGCTATCAAGCTG CTTTAGTTGGTGCAGCAGGGATGATTCTTTGCAATGACAAGGCAAGTGGCAACGAAATCATAGCAGATCCTCATGTTCTCCCAGCAGCACAAATTACCTA CACAGATGGTCTTGCTGTATTTGCCTACATTAATTCCACCGACCATGCTCTAGGATATATTTCCGCACCAACAGCAAAGTTAGGGACAAAACCTGCTCCA TCCATAGCTGCATTCTCCTCTAGAGGGCCAAATACTGTCACGCCAGAGATATTGAAGCCTGATATAACTGCACCAGGAGTGAACATTATAGCAGCCTTTA GTGAAGCAATCAGCCCTACTGATTTTGACTTTGATAAGCGCAAGTCTCCTTTCATCACCGAATCTGGCACATCTATGTCTTGTCCACATGTTGCAGGTGC GGTCGGACTTCTTAAAACTCTCCATCCTGATTGGAGTCCAGCTGCAATCAGATCTGCAATCATGACAACCGCAAGAACGAGAGCCAACACTATGACACCA ATGGTTGATGGGAGAGATGGTTTGGAGGCAACACCATTTAGTTATGGTTCTGGACATATAAGACCAAACCGCGCTCAGGATCCAGGCTTGGTCTATGACT TGAGCATCAATGATTACTTGGACTTCCTGTGCGCTAGCGGATACAACTCTACCATGATAGAACCCTTCTCTGATGGTCCCTATAAATGTCCCGAGTCAAC TAGTATTTTTGATTTCAACAATCCTTCAATAACTATACGCCAGCTACGTAACTCAATGAGTGTGATCAGAAAAGTGAAGAATGTAGGCCTAACAGGAACT TATGCAGCCCACGTTCGAGAACCATATGGGATTTTAGTTTCTGTGGAGCCCAGTATCTTGACATTTGAGAACAAGGGTGATGAGAAGAGTTTTAAGGTTA CTTTTGAGGCTAAGTGGGATGGCGTAACTGAAGACCATGAATTTGGAACCCTAACATGGACGGATGGTAGACATTATGTTAGGAGTCCTATTGTAGTTGC TTTTGGAGGTGATTATTAG
AA sequence Show only first row Show all	>Potri.006G001600.1 pacid=42768892 polypeptide=Potri.006G001600.1.p locus=Potri.006G001600 ID=Potri.006G001600.1.v4.1 annot-version=v4.1 MRFPRVSILLLLIILFSLFQSPAFAIKKSYVVYLGSHAHGPQISKVDLDAVADSHQEFLASYLGSREKARDAIIYSYDRHINGFAAMLEEEEAAEIARHP NVVSVFLNQGRKLHTTHSWDFMLLEKDGVVDPSSLWKRARFGEDSIIANLDTGVWPESLSFSEEGIGPVPSKWKGTCENDTAVGVPCNRKLIGARYFNRG YIAYAGGLTSSDNSARDKDGHGTHTLSTAGGNFVPGANVFGLGNGTAKGGSPKARVASYKVCWPPVNGSECFDADIMKAFDMAIHDGVDVLSVSLGGEPT DYFNDGLAIGAFHAVKNGISVVCSAGNSGPMDGTVTNNAPWIITVGASTLDREFETFVELRNGKRLQGTSLSSPLPEKKFYPLITGEQAKAANASAADAL LCKPKSLDHEKAKGKVVVCLRGETGRMDKGYQAALVGAAGMILCNDKASGNEIIADPHVLPAAQITYTDGLAVFAYINSTDHALGYISAPTAKLGTKPAP SIAAFSSRGPNTVTPEILKPDITAPGVNIIAAFSEAISPTDFDFDKRKSPFITESGTSMSCPHVAGAVGLLKTLHPDWSPAAIRSAIMTTARTRANTMTP MVDGRDGLEATPFSYGSGHIRPNRAQDPGLVYDLSINDYLDFLCASGYNSTMIEPFSDGPYKCPESTSIFDFNNPSITIRQLRNSMSVIRKVKNVGLTGT YAAHVREPYGILVSVEPSILTFENKGDEKSFKVTFEAKWDGVTEDHEFGTLTWTDGRHYVRSPIVVAFGGDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.006G001600 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.001G256600 [exp]	4.47	0.9268
AT1G24400		ATLHT2, AATL2, ...	ARABIDOPSIS LYSINE HISTIDINE T...		Potri.008G179000 [exp]	5.19	0.9141
AT3G56180			Protein of unknown function (D...		Potri.008G075100 [exp]	6.32	0.9082
AT5G53540			P-loop containing nucleoside t...		Potri.012G022985 [exp]	7.74	0.9066
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Potri.005G022800 [exp]	9.79	0.7098
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.011G110100 [exp]	10.00	0.7767
AT4G02550			unknown protein		Potri.011G088750 [exp]	13.56	0.7143
AT3G19080			SWIB complex BAF60b domain-con...		Potri.007G039350 [exp]	13.67	0.8488
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.013G012666 [exp]	16.43	0.8691
AT2G29620			unknown protein		Potri.009G043000 [exp]	19.62	0.6884

Compare expression of checked genes

Potri.006G001600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.