Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17180 711 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 456 / 1e-157 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 453 / 2e-156 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 446 / 2e-153 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 434 / 6e-149 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 434 / 7e-149 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 429 / 9e-147 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 427 / 3e-146 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 410 / 4e-139 O-Glycosyl hydrolases family 17 protein (.1) AT5G58480 405 / 9e-138 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G002800 [exp] 882 / 0 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 471 / 2e-163 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G076500 [exp] 461 / 2e-159 AT5G58480 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 460 / 4e-159 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G059700 [exp] 459 / 1e-158 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.019G032900 [exp] 456 / 8e-158 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G280700 [exp] 457 / 2e-157 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 450 / 5e-155 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 445 / 4e-153 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039095 [exp] 761 / 0 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 456 / 1e-157 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040579 [exp] 454 / 7e-157 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 452 / 3e-156 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031098 [exp] 452 / 9e-156 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 449 / 6e-155 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10001183 [exp] 442 / 5e-152 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 440 / 5e-151 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 434 / 2e-148 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10042269 [exp] 422 / 6e-144 AT5G58480 606 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.006G002100.1 pacid=42769084 polypeptide=Potri.006G002100.1.p locus=Potri.006G002100 ID=Potri.006G002100.1.v4.1 annot-version=v4.1 ATGTCAAGGTTACCAAGAACTCTGCTTTATCTGGTTTTTGTAGTAATATTGCTATCAGGGTCATTTCCAGTGGGAGAATCAGCTATAGGAGTTAATTGGG GGACAATTTCATTTCACAGGTTGAAGCCTTCGACAGTGGTGGATCTGTTGAAAGACAACAAGATAAAGAAAGTGAAGTTGTTTGATGCAGATCCAGATGC GCTAACTGCTTTAGTGGGGAGTGGGATTGAAGTCATGGTTGGGATTCCTAATGAGATGTTGGCTGTTCTTAGCTCTTCAACTGATGCTTCTGATTTGTGG GTTAGGCAGAATGTTTCTAGATATGTTGTTAAAGGTGGTGCTGATATCAGGTATGTTGCCGTGGGAAACGAGCCATTCCTCACAAGTTACTCAGGTCAAT TTCAATCTTTTGTTGTCCCTGCTCTGCTCAATCTACAACAGTCTTTGGTCAAAGCAAATCTTGCTGGCTATGTAAAGCTAGTTGTCCCTTGCAACGCTGA TGCTTATGAGTCTTCTCTTCCTTCTCAAGGGGCATTCCGACCTGAACTAACTCAAATTATGACTCAACTTGTGTCCTTCCTCAACTCAAATGGCTCACCT TTTGTTGTGAATATCTACCCATTTCTTAGCTTGTATGGGCACTCAGATTTTCCACAAGATTATGCATTCTTTGAGGGGAGTACCCATCCTGTTACAGATG GGTCTAATGTTTACTACAATGCTTTTGATGGGAATTTCGACACTTTAGTTTCAGCACTCAACAAACTTGGATATGGTCAGATGCCCATAGTTATCGGGGA GGTGGGCTGGCCAACTGATGGAGCCTTTGGTGCAAACCTCAGTGCAGCAAGGTTTTTCAACCAGGGGCTCATAAATCATGTCTTGAGTAACAAAGGAACC CCTCTGAGACCACGTGTCCCTCCCGTGGATATTTATCTTTTCAGCCTACTTGATGAAGGAGCAAAGAGTGTACTTCCTGGAAACTTTGAAAGACACTGGG GGATTTTCTCATTTGATGGCCAGGCTAAATATGCACTGAACCTTGGTTTGGGTAACAGGTTACTAAAGAATGCGAAGAACGTTGAGTATCTCCCATCAAG GTGGTGTGTGGCAGACCCCTCTAAAGATCTGACAAACGTGGCCAACCACATGAGAATTGCCTGCAGTGTTGCAGATTGCACAACACTTGATTATGGTGGA TCGTGCAATGGAATTGGGGCAAAAGGAAATATCTCTTATGCATTCAACAGTTACTATCAGCTCCAGATGCAAAATGCACAAAGCTGTGATTTCGATGGGC TTGGGATGGTGACATTTCTAGACCCATCAGTTGGTGATTGCAGGTTTCTTGTTGGAGTGACTGATCATAAGAAATCAATAGCTTTCAGACCAACTCATAG GAGGACCACCATTTGGACTTCTATCCTGTGGTGGGTGTGGTTCTTTCTAATGTTGTAA
AA sequence Show only first row Show all	>Potri.006G002100.1 pacid=42769084 polypeptide=Potri.006G002100.1.p locus=Potri.006G002100 ID=Potri.006G002100.1.v4.1 annot-version=v4.1 MSRLPRTLLYLVFVVILLSGSFPVGESAIGVNWGTISFHRLKPSTVVDLLKDNKIKKVKLFDADPDALTALVGSGIEVMVGIPNEMLAVLSSSTDASDLW VRQNVSRYVVKGGADIRYVAVGNEPFLTSYSGQFQSFVVPALLNLQQSLVKANLAGYVKLVVPCNADAYESSLPSQGAFRPELTQIMTQLVSFLNSNGSP FVVNIYPFLSLYGHSDFPQDYAFFEGSTHPVTDGSNVYYNAFDGNFDTLVSALNKLGYGQMPIVIGEVGWPTDGAFGANLSAARFFNQGLINHVLSNKGT PLRPRVPPVDIYLFSLLDEGAKSVLPGNFERHWGIFSFDGQAKYALNLGLGNRLLKNAKNVEYLPSRWCVADPSKDLTNVANHMRIACSVADCTTLDYGG SCNGIGAKGNISYAFNSYYQLQMQNAQSCDFDGLGMVTFLDPSVGDCRFLVGVTDHKKSIAFRPTHRRTTIWTSILWWVWFFLML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.006G002100 [exp]	0	1
AT4G25315			Expressed protein (.1.2)		Potri.004G189300 [exp]	2.00	0.8476
AT4G26400			RING/U-box superfamily protein...		Potri.017G038300 [exp]	2.82	0.8264
AT5G04520			Protein of unknown function DU...		Potri.010G233000 [exp]	4.24	0.8100
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.018G065800 [exp]	4.89	0.7773	ORG4.2
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.004G042500 [exp]	5.00	0.7905
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Potri.003G008300 [exp]	6.00	0.7874
AT3G06040			Ribosomal protein L12/ ATP-dep...		Potri.015G077200 [exp]	8.36	0.7834
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.012G111900 [exp]	9.79	0.7418
AT5G14105			unknown protein		Potri.017G066388 [exp]	13.49	0.7433
AT1G60080			3'-5'-exoribonuclease family p...		Potri.016G055600 [exp]	14.86	0.7393

Compare expression of checked genes

Potri.006G002100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.