Plant FIBer expression Database

Potri.006G002500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22640 174 / 9e-49 PAP85 cupin family protein (.1)
AT4G36700 70 / 1e-12 RmlC-like cupins superfamily protein (.1)
AT2G28490 66 / 2e-11 RmlC-like cupins superfamily protein (.1)
AT2G18540 51 / 2e-06 RmlC-like cupins superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G212266
[exp]
220 / 4e-68 AT3G22640 128 / 2e-33 cupin family protein (.1)
Potri.005G212333
[exp]
187 / 5e-56 AT3G22640 76 / 2e-15 cupin family protein (.1)
Potri.009G054700
[exp]
108 / 3e-25 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042617
[exp]
413 / 5e-140 AT3G22640 202 / 2e-58 cupin family protein (.1)
Lus10042615
[exp]
396 / 1e-133 AT3G22640 201 / 3e-58 cupin family protein (.1)
Lus10022070
[exp]
380 / 3e-127 AT3G22640 205 / 8e-60 cupin family protein (.1)
Lus10022072
[exp]
218 / 4e-68 AT3G22640 114 / 4e-29 cupin family protein (.1)
Lus10037937
[exp]
90 / 9e-19 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1)
Lus10006420
[exp]
89 / 9e-19 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1)
Lus10041722
[exp]
87 / 6e-18 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1)
Lus10011364
[exp]
86 / 7e-18 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF00190 Cupin_1 Cupin
Representative CDS sequence
>Potri.006G002500.1 pacid=42769180 polypeptide=Potri.006G002500.1.p locus=Potri.006G002500 ID=Potri.006G002500.1.v4.1 annot-version=v4.1
ATGGTGAGAAAGCAGCTGGAAATTAGTTTGTTGGTTTCTTTAACATGCCTCCTGCTATTTCCATCCATATTTACAGTGCGTGCAAATGCAGCCACACGAA
CTAGTACTTCCTCTACTACTCTTCAGACATCGGATCAGCAAGTACTGGACTATAAGATACAAGACCAACGAGGGGATCAAGAAGAGGGAGGAGGACACAA
GGACCTGGGGGATGAAGAAGAGGAGATCAATCCTTATGTGTTTGAATACGATAGGGATTTTGTTTCTAGAGTCAAGACTGAACACGGAAGAGTTGATGTT
CTTCAACAATTCACCAAGAACTCAAATCTTCTTAGTGCTCTAGCGAATTACCGTGTTGAAATTCTTGAAGCTAATCCTCTAACATTCATAACCCCTGCCC
ACATAGATGCTGATTTTGTTCTCTTCGTTGTTAAGGGACGTGGGGCTATAACTGTGATCCATGAGGAGATAAAGAGAGAGACCTCAAACCTGGAATGTGG
AGATATCTTCAGAGTTCATGCTGATACTACTTTTTATATGGTTAACCGAGATGAATATGAGAAACTTTATGTCGCGAAGATCCTTTTCCCGGTCAATCTT
CCTGGCAACTACGAGGCATTCTATGGAGCAGGTGGTGGAGACTCAGAATCTTTCTTCGAGGCATTCAGCTGGGATTTAGTCGAGGCTGCTCTTAATACTG
AGAGAGGAAGGCTGGAGAAAATCTTCAAACAACAGCAAGGAAAAATCATGAATGCCACCAAGCAACAGATCGAGGCCTTGAGCCAAGATGAAGAAGGTGT
ACGTGGCAGCAATGGCGCTTGGCCTTTCCCCTCTAATGTGTCAGGCAGCCCATTCAATCTTTTCAAGAAGGGTGCTATTAAAAGCAACGACTACGGGGAT
CTCTATGAAGCCGATCCTAGAGATTTCAAGCCACTTGAATACCTTAATCTTATAGTCTCTTTTGCCAGCATCACTCAAGGATCTATGGCTGGACCCTTCC
ACTCAAAGGCAGCCAAGATATTCATTGTTGTGGAAGGTGAGGGATACTTTGAGATGACATGTCCTCACCACTCCAGCTCCTCTGGTTCGAGCAGTCCAAC
TTACCAAAATATAAGCTCGCACTTGAGGCGTGGAACCATCTTCATTGCCCCTGCCAGCTATCCGGTGGCTATCGTGGCTTCCAATAATAGTACTCTCAAA
CTTCTATGCTTTGAGGTTAATGCACAAGCAAACATAAGATACACTCTCGCAGGGAAAGGGAACGTTATTGATGCAATGCACATAGAAGCGAAAGAGTTGG
CCTTTGGTGTAGCAGGAATAGAAGTAGAACAAATTTTCAGGAACCAAATGGACTGCTTCTTCTTTCCTGGGCCAAGCACCCGGCAACAGAGACAAGGCAG
CCGTGCTGATACATGA
AA sequence
>Potri.006G002500.1 pacid=42769180 polypeptide=Potri.006G002500.1.p locus=Potri.006G002500 ID=Potri.006G002500.1.v4.1 annot-version=v4.1
MVRKQLEISLLVSLTCLLLFPSIFTVRANAATRTSTSSTTLQTSDQQVLDYKIQDQRGDQEEGGGHKDLGDEEEEINPYVFEYDRDFVSRVKTEHGRVDV
LQQFTKNSNLLSALANYRVEILEANPLTFITPAHIDADFVLFVVKGRGAITVIHEEIKRETSNLECGDIFRVHADTTFYMVNRDEYEKLYVAKILFPVNL
PGNYEAFYGAGGGDSESFFEAFSWDLVEAALNTERGRLEKIFKQQQGKIMNATKQQIEALSQDEEGVRGSNGAWPFPSNVSGSPFNLFKKGAIKSNDYGD
LYEADPRDFKPLEYLNLIVSFASITQGSMAGPFHSKAAKIFIVVEGEGYFEMTCPHHSSSSGSSSPTYQNISSHLRRGTIFIAPASYPVAIVASNNSTLK
LLCFEVNAQANIRYTLAGKGNVIDAMHIEAKELAFGVAGIEVEQIFRNQMDCFFFPGPSTRQQRQGSRADT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G22640 PAP85 cupin family protein (.1) Potri.006G002500
[exp]
0 1
Potri.007G097700
[exp]
1.41 0.9866
AT5G22430 Pollen Ole e 1 allergen and ex... Potri.009G019300
[exp]
2.44 0.9822
AT2G36430 Plant protein of unknown funct... Potri.003G181600
[exp]
2.82 0.9808
AT1G11670 MATE efflux family protein (.1... Potri.011G002200
[exp]
3.00 0.9722
Potri.016G139350
[exp]
3.46 0.9766
AT4G01470 ATTIP1.3, GAMMA... tonoplast intrinsic protein 1;... Potri.004G216500
[exp]
3.87 0.9788
AT2G46640 unknown protein Potri.014G102600
[exp]
5.29 0.9745
AT3G02500 unknown protein Potri.017G112600
[exp]
5.47 0.9678
AT1G65620 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral o... Potri.010G177100
[exp]
6.00 0.9497 AS2.1
AT4G05200 CRK25 cysteine-rich RLK (RECEPTOR-li... Potri.011G029900
[exp]
7.21 0.9284

Potri.006G002500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.