Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55790 186 / 7e-56 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) AT5G56060 166 / 4e-51 Domain of unknown function (DUF2431) (.1) AT5G56075 162 / 3e-49 Domain of unknown function (DUF2431) (.1) AT1G55800 147 / 9e-43 Domain of unknown function (DUF2431) (.1) AT5G25030 143 / 1e-42 Domain of unknown function (DUF2431) (.1) AT4G26485 120 / 5e-34 Domain of unknown function (DUF2431) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G141900 [exp] 205 / 1e-66 AT1G55790 219 / 7e-69 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438100 [exp] 198 / 7e-64 AT1G55790 207 / 4e-64 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G165600 [exp] 202 / 8e-64 AT1G55790 275 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141700 [exp] 195 / 1e-62 AT1G55790 198 / 1e-60 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.003G101200 [exp] 194 / 7e-60 AT1G55790 276 / 8e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438200 [exp] 146 / 9e-43 AT1G55790 169 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141501 [exp] 97 / 2e-25 AT4G26485 102 / 2e-28 Domain of unknown function (DUF2431) (.1) Potri.016G003066 [exp] 77 / 4e-18 AT1G55800 48 / 1e-07 Domain of unknown function (DUF2431) (.1) Potri.016G003133 [exp] 63 / 4e-13 AT1G55800 47 / 1e-07 Domain of unknown function (DUF2431) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032898 [exp] 194 / 3e-61 AT1G55790 232 / 2e-72 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10039534 [exp] 180 / 3e-56 AT1G55790 173 / 9e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032900 [exp] 180 / 2e-55 AT1G55790 256 / 1e-81 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10000235 [exp] 172 / 2e-52 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10002759 [exp] 172 / 2e-52 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016345 [exp] 171 / 8e-52 AT1G55790 183 / 2e-53 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032901 [exp] 134 / 8e-38 AT1G55790 196 / 1e-58 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016346 [exp] 68 / 1e-13 AT1G55800 72 / 8e-15 Domain of unknown function (DUF2431) (.1) Lus10032899 [exp] 0 / 1 AT1G55790 62 / 2e-21 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF10354 [poplar] [flax] DUF2431 Domain of unknown function (DUF2431)
Representative CDS sequence Show only first row Show all	>Potri.006G002700.1 pacid=42768548 polypeptide=Potri.006G002700.1.p locus=Potri.006G002700 ID=Potri.006G002700.1.v4.1 annot-version=v4.1 ATGGGAAAACAAGAAGAATATCAAGAGACAGAAACAGAATCAAATTCATCAGATGATGAGGAAGATGAGGAGCCAGAGAAATGGAAAAAACATTACTCAT CAAAGCACCGGATGTTATTGGTCGGAGAAGGTGACTTCTCCTTCTCTGTTTCTCTAGCTAGAGCTTTTGGTTCTGCTTGCAACTTGGTTTCTACTACTGT TGATACCCAAGATAACATAGCTAAAAAGTACAGTAATGGAGTACGAAATGTGAGGGAACTAGAAGAGAAGGGAGGGTTAGTGTTCTATGGAGTGGATGCA GAAGAGATGAGTGAACACTTCTTTTTGAGGACTCAGAGGTTTGATCGAATTGTCTATAACTTCCCTCATGTTGGTTTCCTCTTCCCTGAGGCTAGCTACT GCCAAATCCAGTTGAACAAGAGACTGATAAAGGGTTATTTAAGCAATGCCAAAGTTCTTTTGAAGCAGGATAAAGGGGAGATTCATGTAACACACAAAGA AGGTGACCCATATGATAAATGGGATTTGGTCAAGAAAGCAGAGAAGATTGGCTTGGGTTTGCACGAAATTGTGCCCTTCTCCAGACGTGATTATCCAGGA TATGAGAACAAGAGAGCCCATGGTAGCCAATCCGATGCTCCTTTTCCACTTGGGGTTTCCAGTACTTACAAGTTCAAGCCCAACCATTCATCAAAGTTCA AATAG
AA sequence Show only first row Show all	>Potri.006G002700.1 pacid=42768548 polypeptide=Potri.006G002700.1.p locus=Potri.006G002700 ID=Potri.006G002700.1.v4.1 annot-version=v4.1 MGKQEEYQETETESNSSDDEEDEEPEKWKKHYSSKHRMLLVGEGDFSFSVSLARAFGSACNLVSTTVDTQDNIAKKYSNGVRNVRELEEKGGLVFYGVDA EEMSEHFFLRTQRFDRIVYNFPHVGFLFPEASYCQIQLNKRLIKGYLSNAKVLLKQDKGEIHVTHKEGDPYDKWDLVKKAEKIGLGLHEIVPFSRRDYPG YENKRAHGSQSDAPFPLGVSSTYKFKPNHSSKFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55790			Domain of unknown function (DU...		Potri.006G002700 [exp]	0	1
AT4G20150			unknown protein		Potri.003G156301 [exp]	1.00	0.8732
AT2G23090			Uncharacterised protein family...		Potri.002G120100 [exp]	2.44	0.8468
AT5G36930			Disease resistance protein (TI...		Potri.005G003900 [exp]	2.82	0.8451
AT5G49320			Protein of unknown function (D...		Potri.010G140400 [exp]	3.46	0.8147
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.012G045000 [exp]	4.24	0.8304	Pt-ATTDX.1
					Potri.006G147350 [exp]	4.47	0.8252
					Potri.015G025700 [exp]	5.29	0.8350
AT3G27520			unknown protein		Potri.001G343200 [exp]	5.38	0.7911
					Potri.003G178500 [exp]	6.32	0.8398
AT5G47900			Protein of unknown function (D...		Potri.009G136700 [exp]	6.63	0.8176

Compare expression of checked genes

Potri.006G002700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.