Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47800 691 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G67900 470 / 7e-160 Phototropic-responsive NPH3 family protein (.1.2.3) AT2G14820 387 / 2e-127 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT3G26490 384 / 7e-127 Phototropic-responsive NPH3 family protein (.1) AT4G37590 370 / 2e-121 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT4G31820 366 / 3e-120 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT5G67440 359 / 4e-117 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT2G23050 349 / 9e-115 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT5G03250 305 / 2e-96 Phototropic-responsive NPH3 family protein (.1) AT1G30440 295 / 1e-91 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G003700 [exp] 985 / 0 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G186100 [exp] 507 / 3e-174 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.010G046800 [exp] 506 / 7e-174 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.018G018600 [exp] 400 / 5e-133 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 393 / 6e-130 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 390 / 6e-129 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 389 / 3e-128 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 384 / 2e-126 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 363 / 1e-117 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039099 [exp] 754 / 0 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038763 [exp] 710 / 0 AT5G47800 612 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 475 / 3e-161 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10042414 [exp] 397 / 2e-131 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 387 / 2e-127 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 382 / 2e-125 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 368 / 1e-120 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 367 / 3e-120 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 354 / 7e-111 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 309 / 4e-97 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.006G003000.1 pacid=42766990 polypeptide=Potri.006G003000.1.p locus=Potri.006G003000 ID=Potri.006G003000.1.v4.1 annot-version=v4.1 ATGAAGTTTATGAAACTTGGGACGCGGCTCGATACCTTCTACACAGAAGAGGCTACCAGGTCTGTGGTATCAGATATACCTAATGACCTTGTTATACAAA TCAGCAACATCAATTATCTTCTTCATCAGCTGCAGTTTTCACTATTACCGAAGTGTGGCCTCTTACAAAGGCTGTGTGCAGATTCTGATGATTCAAGTAC TGTTACCATACAGCTGCATGATATTCCTGGAGGGGAAGATGCTTTTGAGCTGTGTGCTAAATATTGCTATGGAATAACAATCAATCTCAGTGCTCATAAC TTTGTATCTGCATTTTGTGCTGCAAAGTTCCTTCGAATGACAGAAGCTGTTGAGAAGGGAAATTTTGTCCTTAAACTTGAGGCCTTCTTTAATTCCTGCG TTCTAGTAGGTTGGAAGGACTCCATTATCACATTACAGACAACAGTCAAGCTAACTGAGTGGTCAGAGAACCTGGGAATCATCAGAAGATGCATTGATTC AATTGTTGGAAAAATCCTCACACCCCCTGCAAAGGTCACATGGTCCTACACTTACACTAGAATAGGGTTCAACAAGCAGCAGCAATTGGTTCCGAAGGAT TGGTGGACAGAGGACATATCTGATCTTGACATAGACCTTTTCCGGTGCATAATTATAGCTATCAAATCAACACATATGCTCCCACCGCAGCTCATTGGTG AAGCTTTGCATGTTTATGCCTGTCGTTGGCTACCAGACACTACAAAGATCACACGTCCAGAGAGCTCAGTGTCTCAGACTGATGAGGTTACAGATAAGCA TCGGAAAATTCTTGAAATCATCGTGAATAAGATCCCATCAGATAAAGGGTCCGTTTCAGTTGGTTTCTTGTTAAGACTACTTAGCATTGCTAACTACCTA GGCGCATCTACAGTTACAAAGACAGAACTTATAAGGAGATCAAGCCTGCAATTAGAGGAGGCAACAGTTAGTGACCTGTTATTTCCTTCACATTCATCCT CTAATCAATATTATTATGATATTGACTTGGTTGCGGCAGTGCTAGAAAGCTTCCTGCTGCTACGGAGAAGAACATCACCAGCACCTACAGAAAACACCCA GTTTATGAGATCAATTAGAAAGATTGGAAAGCTTGTTGACTCTTACCTTCAAGCAGTTGCCACAGATATCAACTTGCCGGTATCAAAAGTTTTATCTGTT GCAGAAGCTTTACCAGATATTGCCAGGAAAGATCATGATGACCTTTACAGGGCAATAAACATTTATCTCAAGAAGCATCCTGATCTAAGCAAGGCAGACA AGAAGCGTCTCTGCAGGAACCTAGACTGCCAAAAACTGTCACCAGAAGTACGCACTCACGCTGTAAAGAATGAGCGGCTACCATTAAGAACAGTTGTGCA AGTCCTATTCTTTGAACAAGAGAAAGGCTCAAGGGAAAATGATCATAGAATGCCAACACAGGAGCTTCTGCTCTCCAGAGGGAAACAGATACCGATAGTA AGGGACGAGCTAAGTAAGCTACAATTAGGCTCGTATGAACAGACCATCCGATCAGATGGAATACCGAGAACTCCAGCACCGTCCGAAAGCAGTACAAGAG ATGATCAAAAACTGAAGAGACCTGACAAAAAGACACCGATGGAAGCAGGAAAAAAAGGTGGTGAGAGAACAAATAGAGGAGAAGGAATCTAG
AA sequence Show only first row Show all	>Potri.006G003000.1 pacid=42766990 polypeptide=Potri.006G003000.1.p locus=Potri.006G003000 ID=Potri.006G003000.1.v4.1 annot-version=v4.1 MKFMKLGTRLDTFYTEEATRSVVSDIPNDLVIQISNINYLLHQLQFSLLPKCGLLQRLCADSDDSSTVTIQLHDIPGGEDAFELCAKYCYGITINLSAHN FVSAFCAAKFLRMTEAVEKGNFVLKLEAFFNSCVLVGWKDSIITLQTTVKLTEWSENLGIIRRCIDSIVGKILTPPAKVTWSYTYTRIGFNKQQQLVPKD WWTEDISDLDIDLFRCIIIAIKSTHMLPPQLIGEALHVYACRWLPDTTKITRPESSVSQTDEVTDKHRKILEIIVNKIPSDKGSVSVGFLLRLLSIANYL GASTVTKTELIRRSSLQLEEATVSDLLFPSHSSSNQYYYDIDLVAAVLESFLLLRRRTSPAPTENTQFMRSIRKIGKLVDSYLQAVATDINLPVSKVLSV AEALPDIARKDHDDLYRAINIYLKKHPDLSKADKKRLCRNLDCQKLSPEVRTHAVKNERLPLRTVVQVLFFEQEKGSRENDHRMPTQELLLSRGKQIPIV RDELSKLQLGSYEQTIRSDGIPRTPAPSESSTRDDQKLKRPDKKTPMEAGKKGGERTNRGEGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47800			Phototropic-responsive NPH3 fa...		Potri.006G003000 [exp]	0	1
AT4G19160			unknown protein		Potri.003G033300 [exp]	4.47	0.8249
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.014G001500 [exp]	11.13	0.7738
AT3G16560			Protein phosphatase 2C family ...		Potri.003G159600 [exp]	11.48	0.7918
AT3G14470			NB-ARC domain-containing disea...		Potri.005G007001 [exp]	14.28	0.8032
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.012G081500 [exp]	18.65	0.7526
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.017G141000 [exp]	20.34	0.7959
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.001G159400 [exp]	20.49	0.7756
AT1G12150			Plant protein of unknown funct...		Potri.006G004100 [exp]	33.16	0.7677
AT1G13570			F-box/RNI-like superfamily pro...		Potri.014G039700 [exp]	38.88	0.7408
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Potri.010G202700 [exp]	40.54	0.7185

Compare expression of checked genes

Potri.006G003000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.