Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03370 1372 / 0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT5G50170 912 / 0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT3G59660 108 / 3e-24 C2 domain-containing protein / GRAM domain-containing protein (.1) AT1G22610 68 / 3e-11 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 62 / 2e-09 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 57 / 5e-08 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 56 / 1e-07 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G51570 54 / 4e-07 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G00700 54 / 6e-07 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 54 / 7e-07 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G003900 [exp] 1819 / 0 AT1G03370 1378 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.015G083500 [exp] 1018 / 0 AT5G50170 1109 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.013G127000 [exp] 100 / 2e-21 AT3G59660 867 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Potri.003G125900 [exp] 63 / 9e-10 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.019G080000 [exp] 63 / 9e-10 AT1G22610 1442 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 60 / 7e-09 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.012G056000 [exp] 60 / 8e-09 AT3G18370 971 / 0.0 C2 domain-containing protein (.1) Potri.001G105400 [exp] 59 / 1e-08 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 59 / 2e-08 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001915 [exp] 1548 / 0 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10015665 [exp] 972 / 0 AT5G50170 1099 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10037679 [exp] 964 / 0 AT5G50170 1097 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10003910 [exp] 754 / 0 AT1G03370 694 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10025600 [exp] 105 / 5e-23 AT3G59660 761 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10027067 [exp] 80 / 4e-15 AT3G59660 714 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10021030 [exp] 65 / 3e-10 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 63 / 1e-09 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10009460 [exp] 62 / 2e-09 AT1G22610 627 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 62 / 2e-09 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0266 [poplar] [flax] PH PF02893 [poplar] [flax] GRAM GRAM domain CL0209 [poplar] [flax] Bet_v_1_like PF16016 [poplar] [flax] VASt VAD1 Analog of StAR-related lipid transfer domain
Representative CDS sequence Show only first row Show all	>Potri.006G003200.1 pacid=42770239 polypeptide=Potri.006G003200.1.p locus=Potri.006G003200 ID=Potri.006G003200.1.v4.1 annot-version=v4.1 ATGGGAGGAATGAAGCTTGTGGTTCGTCTAATAGAGGCAAGGAATTTGCCACCAACGGATCCAAATGGATTAAGAGATCCATATGCCAAGTTACAGTTAG GAAAGCAGAAATTTAAGACAAAAGTTGTAAAGAAGAACTTGAACCCAAGCTGGGGAGAGGAGTTCAGTTTTAAAGTGGAGGACTTGAATGAGGAACTTGT AGTTGGTGTCTTGGATGAAGACAAGTACTTCAACGATGATATTGTTGGGCAGATTAAGGTTCCAGTTTCGCATGTTTTTGATGCGGACAATCAGTCACTT GGCACTGTTTGGTACTCACTGCAACCCAAAAACAAGAAGTCCAGGTTCAAGGAATGCGGTGAGATTCTTTTAAGTATAAGTTTTTCTCAATCTTTTCCTG ACTCAAATTGCAATGCTTCACAATCGAAGAAGAATATGGATGTAACGCGATCTCCGTCTAGGTCTTTTAATGGGACAAACAACTCATCCCCAGCAAGATT AGAAGAATCTGCTTCCTCAAAAGAAGAGAAGTTTTTTGCACAAAAGAAATTAGCTGGAAGAATTGTTCAAATATTTAACAAAAATTCAGACGTGATTTCA GTCACTACAAGTAGAAGCACTGAAATTTCAGAGCAATCAGAAACTGATGGATCTGAGGTTTGTGATGATAAGGCTGAGGACCAGTCCTCTTCTGGCAACT TTGAAGAACTTATGAAAGAGATGGAATCTAGAGATGTAGGAAGTGAAGTTCCAAATAACCTACCAGGAGGAATCCTTGTAGACCAATCATATGTGATTTC ACCCCCAGATTTAAACTCTTTTTTCTTTTCACCTGATTCAAGTCTTGCCAGATTGTTGTCAGACTTTGTGGGAAATTCAGAACAGCAATTTGGTCCTTGG AGATTTGAGAATAGTAGTGAGAACTTGAAAAGAGTAATTACTTACGTAAAGGCACCAACCAAATTAGTTGGTGCTCTGAAAGCTAGTGAGGAACAAACTT ATCTAAAAGCAGATGGGAAGATATTCGCTGTTTTGATCAGTGTGAGCACTCCGGATGTAATGTACGGTAGCACCTTTAAAGTTGAATTGCTTTACTGCAT TACTTCTGGCCCTGAGTTGCCATCAGGAGAGAAAACTTCACATTTGGTTATATCCTGGCGCATGAACTTTTTACAAAGCTCCATGTTTAAAAGTATGATA GAAAACGGAGCCCGTTCAGGCGTAAAGGACAGTTTTGAGCAAGTTTCAACTTTTTTATCTCAAAATGTTAAGCCAGTTGATTTGAAGGACTTGGGATCTA GTAAGGAACAGGTTCTGGCTTCATTGAAGGTGGAACCCCAATCAGATGGGAAGCTGGCCATACAATATTTTGCTAACTTTACTGTAGTCTCTGCAGTTTT TATGGCATTGTATGTGTTTGTGCACGTCTGGCTAGCTGCACCCAGTGCAATTCAAGGGCTTGAATTTGTTGGGCTTGACTTACCAGATTCAATTGGTGAA GTCATTGTGTGTGGTGTCCTGACTCTTCAGTGTGAAAGGGTGTTAGGGTTACTTTCACGCTTCATGCAAGCTAGAGCTCAAAAAGGCACCGATCATGGAG TAAAAGCACAAGGAGATGGCTGGGTGCTTACGGTTGCCTTGATTGAGGGAAGTCATTTGCCGGCTGTTGATTCTAGTGGCTTCTGTGACCCATACGTGGT ATTCACCTGCAATGGGAAAACTAGAACAAGCTCAATCAAGTTTCAGAAATCTGATCCTCTGTGGAATGAAATATTCGAATTTGATGCCATGGATGATCCT CCTTCTGTGCTGGATGTGGAAGTTTATGATTTTGATGGGCCTTTTAATGAATCCATGTCCTTGGGACATACAGAGATTAATTTTGTAAAATCTAATCTAT CAGATTTAGCTGATGTGTGGGTTCCTCTTCAAGGAAAGTTAGCACAAGCATGTCAGTCTAGGCTGCACTTAAGGATTTTCTTGAACAATACGAGAGGTAG CAATGTTGTTAAAGAGTACTTAAGTAAGATGGAGAAAGAGGTGGGGAAGAAGATAAATTTGCGTTCTCCTCAAACAAATTCAGCCTTCCAGAAGGTTTTT GGGCTTCCACCAGAGGAATTCCTTATCAATGACTTCACCTGTCACTTAAAACGAAAGATGCCATTACAGGGTCGGCTGTTTCTTTCAGCAAGAATAATTG GATTCTATGCAAATTTATTTCGGCAGAAGACTAAATTTTTTTTCCTTTGGGAGGACATAGTTGATATCCAAGTTGATACTCCTACTCTATCATCAATGGG TAGTCCAGTTATCGTTATAACTCTCCGACAAGGCAGAGGTATGGATGCCAGGCATGGAGCCAAGACAATTGATGATGAAGGGAGGCTGAAGTTTCATTTC CAGTCTTTTGTATCTTTTAATGTAGCAAATAGGACAATCATGGCTTTGTGGAAGGCCAGATCATTGAGTCCTGAACAGAAGGTGCAAATAGTTGAAGAAG AATCAGAAACCAAATTCCTTCAAACTGAGGAGAGTGGGTCTTTCTTGGGTCTTGAGGATGTCAGCATGTCTGAGGTTTATGCTTGTTCCCTTTCTGTCCC TATCAATTTCTTATCGGAGCTGTTTGGTGGGGGTGAATTGGATCGTAAAGTAATGGAGAAAGCTGGTTGTCTTAGCTATTCTTACACCCCATGGGAATCA GTGAAGACTGAAGTATACGAGAGGCAATTATATTACAGATTTGATAAGCACGTATCTCGTTTTGGAGGAGAGGTCACAAGTACACAGCAGAAATACCCCC TCTCTGATAGGAAAGGTTGGATTGTCGAAGAGGTTATGACTCTTCATGGAGTTCCCCTGGGTGACTTTTTTAATCTTCACCTGAGATATCAAATTGAGGA TTTTCCCTCAAGACTGAAGGGCTGTCATGTGCGTGTATCCATGGGAATCGCATGGCTGAAAAGTTCCTGGCATCAAAAAAGGATTTCAAAGAACATCATC TCAAGCCTGCAAGATCGTCTGAAGTTGATATTTAATGCAGTTGAAAAGGAGTTTGCAAATAGATAA
AA sequence Show only first row Show all	>Potri.006G003200.1 pacid=42770239 polypeptide=Potri.006G003200.1.p locus=Potri.006G003200 ID=Potri.006G003200.1.v4.1 annot-version=v4.1 MGGMKLVVRLIEARNLPPTDPNGLRDPYAKLQLGKQKFKTKVVKKNLNPSWGEEFSFKVEDLNEELVVGVLDEDKYFNDDIVGQIKVPVSHVFDADNQSL GTVWYSLQPKNKKSRFKECGEILLSISFSQSFPDSNCNASQSKKNMDVTRSPSRSFNGTNNSSPARLEESASSKEEKFFAQKKLAGRIVQIFNKNSDVIS VTTSRSTEISEQSETDGSEVCDDKAEDQSSSGNFEELMKEMESRDVGSEVPNNLPGGILVDQSYVISPPDLNSFFFSPDSSLARLLSDFVGNSEQQFGPW RFENSSENLKRVITYVKAPTKLVGALKASEEQTYLKADGKIFAVLISVSTPDVMYGSTFKVELLYCITSGPELPSGEKTSHLVISWRMNFLQSSMFKSMI ENGARSGVKDSFEQVSTFLSQNVKPVDLKDLGSSKEQVLASLKVEPQSDGKLAIQYFANFTVVSAVFMALYVFVHVWLAAPSAIQGLEFVGLDLPDSIGE VIVCGVLTLQCERVLGLLSRFMQARAQKGTDHGVKAQGDGWVLTVALIEGSHLPAVDSSGFCDPYVVFTCNGKTRTSSIKFQKSDPLWNEIFEFDAMDDP PSVLDVEVYDFDGPFNESMSLGHTEINFVKSNLSDLADVWVPLQGKLAQACQSRLHLRIFLNNTRGSNVVKEYLSKMEKEVGKKINLRSPQTNSAFQKVF GLPPEEFLINDFTCHLKRKMPLQGRLFLSARIIGFYANLFRQKTKFFFLWEDIVDIQVDTPTLSSMGSPVIVITLRQGRGMDARHGAKTIDDEGRLKFHF QSFVSFNVANRTIMALWKARSLSPEQKVQIVEEESETKFLQTEESGSFLGLEDVSMSEVYACSLSVPINFLSELFGGGELDRKVMEKAGCLSYSYTPWES VKTEVYERQLYYRFDKHVSRFGGEVTSTQQKYPLSDRKGWIVEEVMTLHGVPLGDFFNLHLRYQIEDFPSRLKGCHVRVSMGIAWLKSSWHQKRISKNII SSLQDRLKLIFNAVEKEFANR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	0	1
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	1.00	0.9506
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145532 [exp]	1.73	0.9118
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	2.23	0.8925	CNGC.1
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	2.44	0.9230
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	2.64	0.8847
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G179900 [exp]	4.00	0.8777
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	4.89	0.9060
AT5G47040		LON2	lon protease 2 (.1)		Potri.001G148400 [exp]	5.29	0.8792	LON.1
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	6.00	0.8870
AT2G35610		XEG113	xyloglucanase 113 (.1)		Potri.004G235800 [exp]	7.07	0.8828

Compare expression of checked genes

Potri.006G003200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.