Plant FIBer expression Database

Pt-FPS1.2 (Potri.006G003400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-FPS1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47770 588 / 0 FPS1 farnesyl diphosphate synthase 1 (.1)
AT4G17190 580 / 0 FPS2 farnesyl diphosphate synthase 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G004100
[exp]
202 / 2e-65 AT5G47770 174 / 2e-54 farnesyl diphosphate synthase 1 (.1)
Potri.004G090600
[exp]
54 / 8e-08 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1)
Potri.017G124600
[exp]
42 / 0.0004 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006168
[exp]
641 / 0 AT5G47770 575 / 0.0 farnesyl diphosphate synthase 1 (.1)
Lus10041057
[exp]
636 / 0 AT5G47770 565 / 0.0 farnesyl diphosphate synthase 1 (.1)
Lus10022545
[exp]
454 / 5e-161 AT4G17190 444 / 3e-157 farnesyl diphosphate synthase 2 (.1.2)
Lus10028509
[exp]
42 / 0.0008 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0613 Terp_synthase PF00348 polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence
>Potri.006G003400.1 pacid=42767327 polypeptide=Potri.006G003400.1.p locus=Potri.006G003400 ID=Potri.006G003400.1.v4.1 annot-version=v4.1
ATGGCAGATCTGAAGTCAACGTTCTTGAATGTCTACTCTGTTCTCAAGAAAGAGCTTCTTGAGGATCCTGCTTTCGAATGGAGTCCTGATTCTCGTGATT
GGGTTGATAGGATGTTGGACTACAATGTGCCTGGAGGGAAGCTAAATCGAGGACTATCTGTGATTGACAGCTACAAATACTTGAAAGAAGGAAAGGAATT
AACGGAAGATGAAATCTTTCTCACAAGTGCTCTTGGTTGGTGTATTGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGACATTATGGATAGTTCCCAT
ACAAGGCGTGGTCAACCCTGCTGGTTTAGGTTGCCCAAGGTTGGTCTTATTGCAGCAAATGATGGGATTCTGCTTCGCAATCACATCCCTAGAATTCTCA
AAAACCACTTCAGAGACAAGGCATACTATGTAGATCTCCTCGACTTGTTCAATGAGGTTGAGTTTCAAACAGCCTCTGGACAGATGATAGATCTGATTAC
AACACTCGAAGGAGAAAAGGACTTGTCCAAGTACACTTTGTCTCTACACCGGCGAATTGTGCAGTACAAGACCGCCTACTACTCATTTTACCTTCCTGTT
GCATGTGCATTGCTCATGGCGGGTGAGAATCTGGACAACCATGTTGATGTAAAGAATATTCTTGTTGAGATGGGAACTTACTTCCAAGTACAGGATGATT
ACTTGGATTGCTTTGGTGCTCCAGAGACAATTGGCAAGATAGGAACAGATATTGAAGATTTCAAGTGCTCTTGGTTGGTTGTGAAGGCTTTGGAGATTTG
CAACGAAGAGCAAAAGAAACTATTACATGAAAACTATGGGAAAGCTGACCCGGCAAATGTAGCAAAAGTGAAGGCCCTCTATCATGAGCTGAACCTTCAG
GGTGTATTTGCGGACTATGAGAGCAAAAGCTATGAGAAACTGATAGCTTCTATCGAAGCTCACCCTAGCAAAGCAGTGCAAGCAGTGTTGAAGTCCTTCT
TGGCTAAAATTTACAAGAGGCAGAAATAG
AA sequence
>Potri.006G003400.1 pacid=42767327 polypeptide=Potri.006G003400.1.p locus=Potri.006G003400 ID=Potri.006G003400.1.v4.1 annot-version=v4.1
MADLKSTFLNVYSVLKKELLEDPAFEWSPDSRDWVDRMLDYNVPGGKLNRGLSVIDSYKYLKEGKELTEDEIFLTSALGWCIEWLQAYFLVLDDIMDSSH
TRRGQPCWFRLPKVGLIAANDGILLRNHIPRILKNHFRDKAYYVDLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPV
ACALLMAGENLDNHVDVKNILVEMGTYFQVQDDYLDCFGAPETIGKIGTDIEDFKCSWLVVKALEICNEEQKKLLHENYGKADPANVAKVKALYHELNLQ
GVFADYESKSYEKLIASIEAHPSKAVQAVLKSFLAKIYKRQK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47770 FPS1 farnesyl diphosphate synthase ... Potri.006G003400
[exp]
0 1 Pt-FPS1.2
AT4G02080 ASAR1, ATSARA1C... secretion-associated RAS super... Potri.008G107800
[exp]
1.00 0.8657 Pt-SAR1.3
AT3G06860 ATMFP2, ATMPF2,... multifunctional protein 2 (.1) Potri.008G220400
[exp]
3.46 0.7996 Pt-MFP2.3
AT1G66680 AR401 S-adenosyl-L-methionine-depend... Potri.015G062400
[exp]
8.48 0.7595 Pt-AR401.1
AT5G05170 IXR1, CEV1, ATH... ISOXABEN RESISTANT 1, CONSTIT... Potri.016G054900
[exp]
10.00 0.8100 Pt-CESA4.2
AT2G01140 PDE345 PIGMENT DEFECTIVE 345, Aldolas... Potri.008G125900
[exp]
11.22 0.7702
AT1G01170 Protein of unknown function (D... Potri.016G055200
[exp]
12.24 0.8305
AT2G14110 Haloacid dehalogenase-like hyd... Potri.017G043900
[exp]
13.26 0.7644
AT3G54250 GHMP kinase family protein (.1... Potri.008G021100
[exp]
15.29 0.7468 MVD1.1
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.008G185500
[exp]
17.43 0.7906
AT1G74030 ENO1 enolase 1 (.1) Potri.012G057500
[exp]
21.09 0.7198

Potri.006G003400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.