Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CCSPK1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47750 840 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 709 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 708 / 0 D6PK D6 protein kinase (.1) AT2G44830 620 / 0 Protein kinase superfamily protein (.1) AT3G27580 597 / 0 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G40030 582 / 0 Protein kinase superfamily protein (.1) AT1G79250 567 / 0 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 553 / 0 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 538 / 0 RSH3 root hair specific 3 (.1) AT2G36350 537 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G004900 [exp] 1099 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 693 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.014G047500 [exp] 678 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 671 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 610 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 580 / 0 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.009G146700 [exp] 575 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 574 / 0 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G114900 [exp] 566 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039105 [exp] 805 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 796 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 789 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10022534 [exp] 689 / 0 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 652 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 640 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 576 / 0 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 569 / 0 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10035591 [exp] 538 / 0 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 538 / 0 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G003800.10 pacid=42767457 polypeptide=Potri.006G003800.10.p locus=Potri.006G003800 ID=Potri.006G003800.10.v4.1 annot-version=v4.1 ATGGCCTCAATAACTTCTAGCAAACCTTCCTTGAAACAGCACCAGAAAACAGCTGGTGTTCAAAAATTGGAGGCCGACCTTAGGCATTTGTCTTCGCAGG GATCAAAACCATGCAAGCCCCAGCTGATTAATCGTGAGCAGGTACAGCTGTTGGTAGAAAATATGCCAAAGCAGGTTTTGTTAGAAGCTTTTGAAAATAT AAAGCTCCTGAATTCTAATCAAGAAGGGGCTTCTGATTCTTTGAGTATTAAGTTGGAATCAAATTCTTCCTTTCCCTGTTTTGAACAAACATCAACTGAG GTGGATTCTAGTGTCAATGAGACTAGAGGCTTACAGGATGTTTCTGTTGATCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAAAACAGTTCAGTAT CTGCCAAAGTTAGTGATGGAACCAGCAGTCTGGGTAAGACGAGTGGAAGTGCCAAGATTAGTGACCGTGTTGATTATGCTGAGGGTGGCAAGAGAAGTAT GTGTAGAGGAAGCACCAGCAGTGATGTTAGTGATGAAAGCACATGTAGCAGCTTTAGTAGTAGTATCAGCAAACCTCACAAAGCAAATGACTTGAGATGG GAAGCCATCCAAGCTGTTAGAGCAAAAGATGGGGTTTTAGGTTTGAGTCATTTTAGACTGCTGAAGAGGTTGGGTTGTGGGGATATCGGGAGTGTGTACC TGTCTGAGCTGAGTGGAACTAAGTGTTATTTTGCAATGAAGGTAATGGACAAAGGCTCTCTTGCCAGTCGCAAGAAGCTGCTTCGGGCTCAGACAGAAAG AGAAATATTGCAATCTCTGGACCATCCTTTCCTTCCAACGCTCTACACCCACTTTGAGACAGATAAATTCTCTTGTCTATTAATGGAGTTCTGTCCTGGA GGAGACTTGCACACTCTCAGACAGAGGCAGCCAGGGAAACATTTTCAAGAGCAGGCAGTAAAGTTTTATGTAGCAGAGGTCCTGCTAGCTTTGGAATATT TGCATATGCTTGGGATTATTTACCGTGATCTTAAGCCAGAAAATGTCCTTGTGAGGGATGATGGGCATATAATGCTCTCCGACTTTGACCTTTCCCTCCG TTGTACTGTCAGCCCAACTCTTGTCAAAACAGCATCTCTTGAGTCCGAGCCGTTACGAAAGAACCCTGTTTACTGTGTTCAGCCTGCTTGTATTGAGCCT TCCTGCATCCAGCCATCCTGTGTTGCGCCTACAACATGCTTTGGGCCCCGCCTCTTTTCTAGCAAGTCCAAGAAGGATAGAAAACCCAAAAATGAACTAG GAAATCAAGTTAGTCCATTACCTGAGCTCATGGCAGAGCCAACTGATGCAAGGTCAATGTCGTTTGTTGGGACCCACGAGTATCTGGCTCCTGAGATCAT CAAGGGTGAAGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGGATCTTTCTATATGAACTCTTATTTGGTAAAACTCCCTTTAAGGGTTCTGGAAAT CGAGCCACATTGTTCAATGTTGTTGGCCAGCCTCTTCGATTCCCAGAATCACCAGTTGTTAGTTTTGCAGCAAGGGATCTTATAAGGGGTTTGCTTGTAA AAGAACCGCAACATAGATTGGCATACAAACGAGGGGCAACTGAAATTAAGCAACATCCCTTCTTTGAAGGTGTGAATTGGGCATTAATACGCTGTGCTAC CCCACCCGAGATCCCAAAGCCAGTTGAGATTGAGAGGATACCTGGCCCAGCATCAACAAGTGAAAAGGCCGCAACAGTTGCAGCTGCTCCTGGTCAAAAA GGTTCTGAAAATTATCTGGAGTTTGATTTCTTTTAG
AA sequence Show only first row Show all	>Potri.006G003800.10 pacid=42767457 polypeptide=Potri.006G003800.10.p locus=Potri.006G003800 ID=Potri.006G003800.10.v4.1 annot-version=v4.1 MASITSSKPSLKQHQKTAGVQKLEADLRHLSSQGSKPCKPQLINREQVQLLVENMPKQVLLEAFENIKLLNSNQEGASDSLSIKLESNSSFPCFEQTSTE VDSSVNETRGLQDVSVDQEKKTSEYGSVKNSSVSAKVSDGTSSLGKTSGSAKISDRVDYAEGGKRSMCRGSTSSDVSDESTCSSFSSSISKPHKANDLRW EAIQAVRAKDGVLGLSHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLLMEFCPG GDLHTLRQRQPGKHFQEQAVKFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCTVSPTLVKTASLESEPLRKNPVYCVQPACIEP SCIQPSCVAPTTCFGPRLFSSKSKKDRKPKNELGNQVSPLPELMAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGN RATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEIERIPGPASTSEKAATVAAAPGQK GSENYLEFDFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.006G003800 [exp]	0	1	Pt-CCSPK1.2
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.016G081700 [exp]	2.82	0.7835
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Potri.003G202300 [exp]	2.82	0.7716
AT5G18230			transcription regulator NOT2/N...		Potri.019G032800 [exp]	3.00	0.7596
AT1G68910		WIT2	WPP domain-interacting protein...		Potri.010G135900 [exp]	3.74	0.7824
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	6.48	0.7708
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G456500 [exp]	11.61	0.7709
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	14.69	0.7762
AT3G06270			Protein phosphatase 2C family ...		Potri.010G028300 [exp]	19.07	0.7676
AT2G47330			P-loop containing nucleoside t...		Potri.002G194600 [exp]	19.20	0.6864
AT1G11420		ATDUF2	DOMAIN OF UNKNOWN FUNCTION 724...		Potri.014G117800 [exp]	20.85	0.7365

Compare expression of checked genes

Potri.006G003800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.