Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47740 215 / 3e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT5G57035 74 / 1e-14 U-box domain-containing protein kinase family protein (.1) AT5G65500 68 / 1e-12 U-box domain-containing protein kinase family protein (.1) AT4G25160 64 / 2e-11 U-box domain-containing protein kinase family protein (.1) AT2G24370 60 / 5e-10 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 60 / 6e-10 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G61550 52 / 2e-07 U-box domain-containing protein kinase family protein (.1.2) AT1G78940 50 / 1e-06 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT4G31230 49 / 2e-06 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G51270 48 / 5e-06 U-box domain-containing protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G084700 [exp] 145 / 4e-42 AT5G47740 124 / 1e-34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G083100 [exp] 138 / 1e-39 AT5G47740 112 / 5e-30 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.009G030400 [exp] 94 / 2e-21 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 84 / 8e-18 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 77 / 1e-15 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.007G001900 [exp] 57 / 5e-09 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170901 [exp] 57 / 6e-09 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 57 / 6e-09 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G002400 [exp] 53 / 1e-07 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029567 [exp] 252 / 1e-81 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10002238 [exp] 238 / 1e-77 AT5G47740 183 / 2e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10043338 [exp] 133 / 2e-37 AT5G47740 128 / 2e-36 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10019487 [exp] 132 / 3e-37 AT5G47740 128 / 3e-36 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10016557 [exp] 76 / 5e-15 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 74 / 3e-14 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10025715 [exp] 64 / 3e-11 AT5G65500 655 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10033340 [exp] 59 / 1e-09 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027592 [exp] 57 / 3e-09 AT3G20200 175 / 2e-50 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10036359 [exp] 58 / 4e-09 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G003900.1 pacid=42768038 polypeptide=Potri.006G003900.1.p locus=Potri.006G003900 ID=Potri.006G003900.1.v4.1 annot-version=v4.1 ATGTCTGTATCATTAACAGATCAAACCGCCTACCTGCACCAAGAAGAAGATATTGCAAGAACTAATGTTTATACTGAAAGTTCATATCAACACCAGCAGT GCTATTATGCTGAAAGCCGTAGCGTATGTGAGATTGAAGAAGAGAAATATTCAAGTGATCTCTTTGAGATTAATCATGGGGTGCCTTTGGAATCCATCAA AGAAGACATAGAAGGGAGTGTGTTTTCCTTTGATGTATATGGAGAGCATCAGAAAGATTGTGTTTATGTTGGTGTAGGAAAGAGTGAGTCTAGCATGGAT GCACTTTCTTGGACATTGAAGAATGCTATTATTGATTCCAATACCATGGTTTTTCTCATCCATATCTTCCCTGAGATACATTACATTCCTTCTCCTTTGG GTAGGCTTCCAAAGAGTCAAGTGAGTGCTCAGCAGGTGGAGAATTACATGGCCCAAGAAAGAGACAAGAGGAGAGAACTCCTACAAAAGTTCATCAACAT GTGTTCTGCATCCAAGGTTAAGGTAGACACCATCCTCGTTGAAAGTGATGCGGTTGGGAAAGCTATGATGGACCTCATTACAGTTGTCAACATGAGAAAG CTGATTCTTGGAACCTCCAAGTCCAATCTAAGGAAGTTGAGGTCTAAGAGAGGAAATGGGATAGCTGATCAAGTAATTCAAAACGCACCCGAGTTCTGCG ATGTCAAGATCATATGCGATGGAAAGGAAGTGGTGATTGACCAGATGGTTGGATCACCTATAACCCTTCCTGACAATCCCAGTGAAAAGTCTTTCACGTT GCAAGATGAATCCAATACAAATAACGACTCGTTTGCTTGCATGTGTTTCAAATCACCGAAAGTTATGTAA
AA sequence Show only first row Show all	>Potri.006G003900.1 pacid=42768038 polypeptide=Potri.006G003900.1.p locus=Potri.006G003900 ID=Potri.006G003900.1.v4.1 annot-version=v4.1 MSVSLTDQTAYLHQEEDIARTNVYTESSYQHQQCYYAESRSVCEIEEEKYSSDLFEINHGVPLESIKEDIEGSVFSFDVYGEHQKDCVYVGVGKSESSMD ALSWTLKNAIIDSNTMVFLIHIFPEIHYIPSPLGRLPKSQVSAQQVENYMAQERDKRRELLQKFINMCSASKVKVDTILVESDAVGKAMMDLITVVNMRK LILGTSKSNLRKLRSKRGNGIADQVIQNAPEFCDVKIICDGKEVVIDQMVGSPITLPDNPSEKSFTLQDESNTNNDSFACMCFKSPKVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47740			Adenine nucleotide alpha hydro...		Potri.006G003900 [exp]	0	1
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.016G133200 [exp]	5.29	0.8400
AT1G62810			Copper amine oxidase family pr...		Potri.001G118200 [exp]	5.74	0.8638
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	8.48	0.8511
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Potri.014G139300 [exp]	10.95	0.8357
AT1G78140			S-adenosyl-L-methionine-depend...		Potri.002G095100 [exp]	11.04	0.8694
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.010G068100 [exp]	11.13	0.8641
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Potri.012G031400 [exp]	17.14	0.8409
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	17.74	0.8324
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	25.69	0.8154
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.007G056900 [exp]	40.69	0.8107

Compare expression of checked genes

Potri.006G003900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.