Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SSH1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47730 496 / 8e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G55840 479 / 2e-171 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G24840 104 / 1e-24 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 100 / 4e-23 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 100 / 5e-23 ATSFH3 SEC14-like 3 (.1.2.3) AT2G18180 98 / 2e-22 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 97 / 8e-22 ATSFH12 SEC14-like 12 (.1) AT4G34580 95 / 2e-21 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G47510 94 / 2e-21 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G16380 91 / 5e-20 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005100 [exp] 623 / 0 AT5G47730 501 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G369400 [exp] 498 / 2e-178 AT1G55840 466 / 4e-166 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G119700 [exp] 100 / 3e-23 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.003G076200 [exp] 100 / 3e-23 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.007G020300 [exp] 100 / 7e-23 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.001G158700 [exp] 97 / 5e-22 AT5G47510 421 / 2e-145 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.002G243000 [exp] 97 / 7e-22 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G157700 [exp] 96 / 2e-21 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 95 / 4e-21 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038752 [exp] 561 / 0 AT5G47730 489 / 4e-175 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10039106 [exp] 524 / 0 AT5G47730 459 / 2e-163 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10043160 [exp] 436 / 5e-151 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10032587 [exp] 414 / 6e-146 AT1G55840 407 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016628 [exp] 413 / 5e-145 AT1G55840 415 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10022533 [exp] 363 / 9e-127 AT1G55840 365 / 8e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10028332 [exp] 105 / 9e-25 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 103 / 5e-24 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022790 [exp] 101 / 2e-23 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028938 [exp] 100 / 2e-23 AT5G47510 422 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G004000.1 pacid=42770571 polypeptide=Potri.006G004000.1.p locus=Potri.006G004000 ID=Potri.006G004000.1.v4.1 annot-version=v4.1 ATGGGGACTGTTTCACATGATGCAATCAATCAGTTCAAGGCATTGATGGATCAAGTTGAGGAGCCATTGAAGAGAGCTTATCAGAATGTCCATCAAGGAT ATCATGCTGAAACTCTGGCGCGTTTTCTAAAAGCTAGAGAATGGAATCTCATCAAAGCCCATAAAATGTTAGTGGATTGTTTGCACTGGAGGGTGCAAAA TGAGATTGACAACATATTAACCAAACCCATAATTCCAGCTGATTTGTACAGAGCAGTGCGTGATTCCCAGCTCATAGGAATGTCAGGTTACTCCAGAGAG GGGCTTCCAGTCTTTGCTCATGGTGTTGGGCTCAGCACATTTGACAAAGCATCTGTCCACTACTATGTGCAGTCACATATTCAAATCAATGAATATCGGG ACCGCATTGTTTTGCCCACTGCATCAAAGAAGTATGGGCGACCAATAACAACCTGCGTGAAGGTTTTGGATATGACTGGCTTAAAGCTTTCAGCACTGAA CCAAATAAAGTTGATGACCATCATATCAACTATCGATGACATGAACTACCCGGAGAAAACAAATACATATTACATTGTAAATGCCCCATATATATTTTCA GCTTGTTGGAAGGTTGTCAAGCCTCTACTACAGGAGAGGACAAGAAAAAAGGTTCAGGTGTTGTCAGGAAACGGGCGAGATGAGCTATTGAAGATAATGG ATGCTGCATCTCTTCCACATTTCTGTAAAAGAGAAGGGTCTGGATCATCTCGACACTCAGAGTACGCAAATGAAAACTGTTTTTCCTTGGATCATCCCTT TCATCAACAGCTATACAACTACATCAAGCAGCAATCATTAGTGAGTGAACCTACTCAACCAATCAAACAAGGGTCTGTTCATGTAGATCTGCCTGAGCCA GCTGCTGAAGGAACAGAGATAGTGAAAACAATTGAATCTGAGATGCATAAGTTAGAGAATGGAAATGGACTTTCTGGGTCTCTAGATGGCCTCAAAATCA ATGACAACTCAGACTATAGAACTACGCATTGCCCGTGA
AA sequence Show only first row Show all	>Potri.006G004000.1 pacid=42770571 polypeptide=Potri.006G004000.1.p locus=Potri.006G004000 ID=Potri.006G004000.1.v4.1 annot-version=v4.1 MGTVSHDAINQFKALMDQVEEPLKRAYQNVHQGYHAETLARFLKAREWNLIKAHKMLVDCLHWRVQNEIDNILTKPIIPADLYRAVRDSQLIGMSGYSRE GLPVFAHGVGLSTFDKASVHYYVQSHIQINEYRDRIVLPTASKKYGRPITTCVKVLDMTGLKLSALNQIKLMTIISTIDDMNYPEKTNTYYIVNAPYIFS ACWKVVKPLLQERTRKKVQVLSGNGRDELLKIMDAASLPHFCKREGSGSSRHSEYANENCFSLDHPFHQQLYNYIKQQSLVSEPTQPIKQGSVHVDLPEP AAEGTEIVKTIESEMHKLENGNGLSGSLDGLKINDNSDYRTTHCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.006G004000 [exp]	0	1	Pt-SSH1.2
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	1.00	0.9616
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.001G159700 [exp]	3.46	0.9373
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.019G092300 [exp]	4.24	0.9304
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	5.91	0.9317
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.004G074500 [exp]	6.00	0.9324
AT4G22840			Sodium Bile acid symporter fam...		Potri.003G117300 [exp]	6.48	0.9136
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.018G037500 [exp]	7.14	0.9368
AT5G13260			unknown protein		Potri.003G164100 [exp]	8.00	0.9243
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	8.12	0.9318
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G097800 [exp]	8.71	0.9230	ALPHA.3

Compare expression of checked genes

Potri.006G004000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.