Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55850 285 / 4e-91 ATCSLE1 cellulose synthase like E1 (.1) AT4G24000 194 / 5e-57 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G23990 194 / 1e-56 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24010 170 / 5e-48 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT5G17420 111 / 3e-27 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G25540 107 / 5e-26 CESA10 cellulose synthase 10 (.1) AT2G32530 107 / 8e-26 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G21770 106 / 1e-25 CESA09, CESA9 cellulose synthase A9 (.1) AT4G32410 105 / 5e-25 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT4G39350 103 / 1e-24 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004300 [exp] 425 / 3e-145 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.001G369100 [exp] 335 / 2e-110 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.003G142400 [exp] 191 / 1e-55 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142500 [exp] 190 / 2e-55 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.010G074700 [exp] 160 / 1e-44 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.010G074800 [exp] 143 / 2e-38 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.002G227300 [exp] 124 / 1e-31 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.014G155300 [exp] 112 / 1e-27 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.006G251900 [exp] 112 / 2e-27 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016625 [exp] 294 / 2e-94 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10023056 [exp] 193 / 3e-56 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10032415 [exp] 177 / 3e-50 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 173 / 3e-49 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 169 / 2e-47 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10022449 [exp] 114 / 5e-28 AT4G18780 1286 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10028597 [exp] 108 / 5e-26 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 108 / 5e-26 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10012198 [exp] 104 / 7e-25 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 104 / 7e-25 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.006G004232.1 pacid=42769569 polypeptide=Potri.006G004232.1.p locus=Potri.006G004232 ID=Potri.006G004232.1.v4.1 annot-version=v4.1 ATGACAGGATTCTCTATAAGATGTAGAGGTTGGAGATCAGTGTACTTCAATCCTGAAAGGAAAGGCTTCTTAGGACTTGCCCCTACAACACTACTGCAAA CATTGGTCCAGCAGGAGAGATGGTCTGAAGGTGAATTACAAATTCTCCTATCAAGGCATGGTCCCTTCTTCGACGGATATAAGAACATACCCCTAAAACT TCTACTTTCATACTGTATCTACTTTCTATGGGCTGCCAACTGCTTCCCTACACTGTACTATGTGGTTGTACCATCACTTTGCCTGCTCAGAGGAATCTCC TTATTTCCAAAGGCATCTAGCCCATGGATTCAGGCATTTGCATATGCCTTCTTTGCCGACCGAGCATATGGTCTCGTAGAATTTCTATGGTGTGATGGTA CATTTCAAGGCTGGTGGAATGATCAAAGGATTTGGATGTTCAAAAGAACAACATCCTATTTAGTTGGCTTCTGTGACACTATCCTAAAGATGTTAGGATT CACAAATCATGCCTTTGTAGTCACTGCCAAGGTTGCGAGTGAGGATGCTTCTAAGAGATACGAGCAAGAGATTATGGAGTTTGGTGTCCCTTCACCAATG TTTAACATCTTAGCAACACTTGCCCTGCTGAACATTTTCAGTTTTATTGGTGGAATAAAGATGGTGATTTCGGATGTCGAAAACAAGGTTTTAGACCTCT TCACATCGCAGATAGTTCTATCTGGGCTCATAGTTTGGATCAACCTACCAGTATACGAAGGGCTCTTCTTTCGAAAGGACAGTGGCAGGATTCCCAATTC AGTGACATACAAATCACTTATTGTTTCACTGTTGGCTTGTTCAGTTGCCCTGCACTAA
AA sequence Show only first row Show all	>Potri.006G004232.1 pacid=42769569 polypeptide=Potri.006G004232.1.p locus=Potri.006G004232 ID=Potri.006G004232.1.v4.1 annot-version=v4.1 MTGFSIRCRGWRSVYFNPERKGFLGLAPTTLLQTLVQQERWSEGELQILLSRHGPFFDGYKNIPLKLLLSYCIYFLWAANCFPTLYYVVVPSLCLLRGIS LFPKASSPWIQAFAYAFFADRAYGLVEFLWCDGTFQGWWNDQRIWMFKRTTSYLVGFCDTILKMLGFTNHAFVVTAKVASEDASKRYEQEIMEFGVPSPM FNILATLALLNIFSFIGGIKMVISDVENKVLDLFTSQIVLSGLIVWINLPVYEGLFFRKDSGRIPNSVTYKSLIVSLLACSVALH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004232 [exp]	0	1
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.013G123000 [exp]	6.48	0.9197
					Potri.002G202000 [exp]	8.12	0.8884
					Potri.006G095200 [exp]	8.94	0.8944
AT2G16790			P-loop containing nucleoside t...		Potri.019G048200 [exp]	10.67	0.8901
AT4G17100			unknown protein		Potri.003G085600 [exp]	11.22	0.8718
AT3G10650		AtNUP1	unknown protein		Potri.008G015350 [exp]	12.48	0.8809
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Potri.009G135300 [exp]	13.85	0.8697
AT2G32910			DCD (Development and Cell Deat...		Potri.005G042700 [exp]	16.00	0.8769
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Potri.011G098500 [exp]	16.52	0.8751
					Potri.006G095100 [exp]	17.14	0.8885

Compare expression of checked genes

Potri.006G004232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.