Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55850 762 / 0 ATCSLE1 cellulose synthase like E1 (.1) AT4G23990 476 / 2e-158 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24000 469 / 5e-156 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G24010 461 / 3e-152 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT5G17420 402 / 1e-126 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G21770 385 / 9e-120 CESA09, CESA9 cellulose synthase A9 (.1) AT2G32530 336 / 3e-104 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32540 331 / 2e-102 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT4G15290 330 / 3e-102 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1) AT2G32620 328 / 2e-101 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369100 [exp] 931 / 0 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.006G004166 [exp] 618 / 0 AT1G55850 429 / 1e-145 cellulose synthase like E1 (.1) Potri.003G142400 [exp] 488 / 8e-163 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142500 [exp] 474 / 2e-157 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.010G074700 [exp] 442 / 4e-145 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.010G074800 [exp] 435 / 2e-142 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.006G004232 [exp] 391 / 9e-132 AT1G55850 284 / 1e-90 cellulose synthase like E1 (.1) Potri.018G103900 [exp] 410 / 8e-130 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 406 / 4e-128 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016625 [exp] 777 / 0 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10003196 [exp] 452 / 9e-149 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 451 / 1e-148 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10032415 [exp] 449 / 8e-148 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023056 [exp] 433 / 2e-141 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10006161 [exp] 387 / 1e-120 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002134 [exp] 344 / 1e-104 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10022982 [exp] 339 / 2e-102 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10029245 [exp] 307 / 2e-91 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10007296 [exp] 306 / 3e-91 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.006G004300.1 pacid=42768251 polypeptide=Potri.006G004300.1.p locus=Potri.006G004300 ID=Potri.006G004300.1.v4.1 annot-version=v4.1 ATGGGAAAAAATGAATATCTTCCACTCTTTGAAACAAGGGCATCAAGAGGAAGGCTTCTGTTCAAACTATACGTGCTTACAATATTTGTTGCTATTTGCA TGATACTGGTGTATAGAGTGAGTTACTTGCCAGTTGAAGGAGCAGTAGAAATATGGAGTTGGATTGGAATGTTCTTCGCAGAGCTATGGTTCAGTTTTTA CTGGTTTATCACTCAACTTGTTCGATGGAACCCCATTTATCGTTACACTTTCAAGGACAGGCTCTCCCAGAGGTACGAGAAGGATTTGCCAGGGGTAGAC ATATTTGTGTGCACTGCAGACCCAGAAATTGAGCCGCCAACTATGGTTATCAACACGGTCTTATCTATGATGGCCTACGATTACCCACCGGAGAAGCTAA GTGTCTATCTATCGGACGATGGTGGCTCAGACTTGACCTTTTATGCAATGTTAGAGGCATCAAGATTCTCAAAACATTGGCTACCATTTTGCAAGAACTT CAAGATACAACCAAGATCACCAGAGGCCTACTTTCGGACAGCTCTTGAGCCACTAGATGACCCTAACAAGGCCGAAGAGTGGTTGTTTGTCAAGAAACTA TACATAGACATGAAGTACCAGATTGAAGCAACCACAAAGCTAGGCAAAGTTCCAGAGGAAATTCGCAAAGAACACAAGGGATTTCACGAGTGGAATTTCA TCTCAAGTCGACGAGATCACCAAACCATCCTTCAAATTCTGATAGATGGAACAGACCCTCAGGCTATGGACAATGAAGGACAACCTTTGCCAACTTTGGT ATATTTGGCTCGTGAAAAGAGACCTCAATATCCTCACAATTTTAAAGCAGGAGCCATGAATGCACTGATAAGGGTGTCTTCTAGGATAAGCAACAGTCCG ATTATCCTCAACGTTGACTGTGACATGTACTCGAATAATTCATACTCGGTAAGAGATGCACTATGCTTTTTCATGGATGAAGAGAAGGGTCGTGAGATTG GATATATACAGTATCCACAAGCGTTTGAGAACATCACAAAGAATGATATTTACTGCAATTCATTGAATATAGAAATGGAGGTGGACTTTCCAGGATTAGA TGGGAATGGAGGGCCTCTATATATCGGTACCGGGTGCTTTCACAGGCGAGAGGCTCTTTGTGGGAGGAGGTACAGCAATGAAAATAAGGTAGACTGGAAG GAAGTGAATTATAGGAAGGTTAAAGAAAGTGCTGGAGTCCTGGAAGAAGTATGCAGAAATCTTGCTAGTTGTACCTACGAAGCGAATACCGAATGGGGAA AGGAGATGGGTTTGAAATATGGCTGTCCAGTGGAGGATGTAATCACAGGACTCTCTGTACAATGTAAAGGTTGGAGATCTATGTACTTCATTCCTGAAAG AAAGGGTTTCTTGGGACTAGCTCCTACAACACTATTGCAGACATTGGTTCAGCACAAGAGATGGTCTGAAGGTGATTTTCAAATTTTGATAACAAGGCAC AGCCCCTTCCTGTTTGGACACAATAGGATACCCCTAAAACTTCAACTTTCATACTGTATCTACTTGCTATGGGCTACCAGCTGGTTCGCTGTGCTGTACT ATCTTGTTGTGCCGCCCCTTTGCCTGCTCAGGGGCATCTCCTTATTTCCGAAGTTATCAAGCCCCTGGATCCAATCATTCGCATATGCCATCTTTGCCAA CCGTGCATATGGCCTCGTAGAATTTGTTTGGAGTGGTGGCACAATTCAAGGTTGGTGGAATGGTCAAAGAATTTGGGTGTTCAAAAGAACAACTTCCCAC TTATTTGGCTTCTTTGACGCTATCAGAAAGTTGTTGGGATTCAGCACCTCTACCTTTGTGATCACCGCAAAGGTGGCTGAAGAGGATGTTTCCGAGAGAT ATGAGAAAGAAAAAATGGAATTTGGTGTTTCATCACCAATGTTTAACATTTTAGCAACACTGGCACTGCTCAACATGTTCAGTTTTGTTGGTGGTATAAA GATGCTGATTATGGATGTTGAAAGTAAGGTTCTTGACCTATTGGCATTGCAGATAATTCTATGTGGGCTCTTAGTTTTGATCAATCTACCAATATACCAA GGACTCTTCTTTCGAAAGGACAGCGGCAGGATGCCATATTCAGTAACATACACGTCAATTATTGTTTCACTCTTGGCTTGTTCAATAGCCTTGTACTAA
AA sequence Show only first row Show all	>Potri.006G004300.1 pacid=42768251 polypeptide=Potri.006G004300.1.p locus=Potri.006G004300 ID=Potri.006G004300.1.v4.1 annot-version=v4.1 MGKNEYLPLFETRASRGRLLFKLYVLTIFVAICMILVYRVSYLPVEGAVEIWSWIGMFFAELWFSFYWFITQLVRWNPIYRYTFKDRLSQRYEKDLPGVD IFVCTADPEIEPPTMVINTVLSMMAYDYPPEKLSVYLSDDGGSDLTFYAMLEASRFSKHWLPFCKNFKIQPRSPEAYFRTALEPLDDPNKAEEWLFVKKL YIDMKYQIEATTKLGKVPEEIRKEHKGFHEWNFISSRRDHQTILQILIDGTDPQAMDNEGQPLPTLVYLAREKRPQYPHNFKAGAMNALIRVSSRISNSP IILNVDCDMYSNNSYSVRDALCFFMDEEKGREIGYIQYPQAFENITKNDIYCNSLNIEMEVDFPGLDGNGGPLYIGTGCFHRREALCGRRYSNENKVDWK EVNYRKVKESAGVLEEVCRNLASCTYEANTEWGKEMGLKYGCPVEDVITGLSVQCKGWRSMYFIPERKGFLGLAPTTLLQTLVQHKRWSEGDFQILITRH SPFLFGHNRIPLKLQLSYCIYLLWATSWFAVLYYLVVPPLCLLRGISLFPKLSSPWIQSFAYAIFANRAYGLVEFVWSGGTIQGWWNGQRIWVFKRTTSH LFGFFDAIRKLLGFSTSTFVITAKVAEEDVSERYEKEKMEFGVSSPMFNILATLALLNMFSFVGGIKMLIMDVESKVLDLLALQIILCGLLVLINLPIYQ GLFFRKDSGRMPYSVTYTSIIVSLLACSIALY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004300 [exp]	0	1
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.013G021000 [exp]	2.64	0.9438
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Potri.001G407800 [exp]	3.00	0.9429
AT3G11210			SGNH hydrolase-type esterase s...		Potri.006G100300 [exp]	3.87	0.9676	CPRD49.3
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	5.09	0.9576	Pt-CLPC.2
AT1G79600			Protein kinase superfamily pro...		Potri.002G000100 [exp]	6.24	0.9512
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.018G032500 [exp]	6.48	0.9452
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Potri.013G124900 [exp]	8.06	0.9469
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.005G203000 [exp]	9.38	0.9143
AT3G19900			unknown protein		Potri.010G169700 [exp]	11.66	0.9434
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Potri.009G089300 [exp]	20.39	0.9494	Pt-CLPR1.1

Compare expression of checked genes

Potri.006G004300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.