Plant FIBer expression Database

Potri.006G004500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22260 345 / 4e-120 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038746
[exp]
361 / 9e-128 AT2G22260 339 / 6e-118 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Lus10039112
[exp]
277 / 2e-93 AT2G22260 270 / 1e-89 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF13532 2OG-FeII_Oxy_2 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence
>Potri.006G004500.1 pacid=42769750 polypeptide=Potri.006G004500.1.p locus=Potri.006G004500 ID=Potri.006G004500.1.v4.1 annot-version=v4.1
ATGTACTTCAACAAGTTTAAGAAACCTGAAAACGAAGAGGTCAAAGAAGAAAGTGGAAGGGGTAAACAAAGCATCGATCTTGGAAATGGCAGTGAAGTTA
TTTACATTCAAAGGTTTATAGGATTTGAGAAATCGTGGGAATTCTTTGATTATCTCAACAAACATATCCCTTGGATTCGACCCACCATTCGTGTCTTCGG
TCGGCAATGCCTCCAGCCTAGAGATACATGTTATGTTGCAAGTCCAGGATTGCCAGAATTAGTGTACAGTGGATATAAGCCACATGCCAACTCTTGGGAT
GATTTCCCTCCAATCAAGGACCTCTTGGATATGGTCCTTGAAGCTCTTCCTGGGAGTAAATTTAACAGCCTGCTCTTGAATAAGTATAAAGGTGGCAATG
ACAATGTTGGTTGGCATGCTGATGATGAGAAGCTTTATGGACCTACTCCTGAAATTGCTTCGGTTTCCTTTGGATGTGAACGTGAATTCTTGTTGAAGAA
GAGACCTATGAAATCATCCCAAGAAAGAAGATTGGATGATGAACCTACTAGCAAGAGACTAAAGAAGAGCAGCCGTTTTGATCAGCATTCATTCATATTG
AAGCATGGATCACTATTGGTGATGAAAGGTTACACGCAAAGGGATTGGCTTCACTCAGTGCCTAAGCGTGCAAAAGCTGAGGCTACTCGGATTAACCTTA
CATTCCGGCATGTTGTTGTCTAA
AA sequence
>Potri.006G004500.1 pacid=42769750 polypeptide=Potri.006G004500.1.p locus=Potri.006G004500 ID=Potri.006G004500.1.v4.1 annot-version=v4.1
MYFNKFKKPENEEVKEESGRGKQSIDLGNGSEVIYIQRFIGFEKSWEFFDYLNKHIPWIRPTIRVFGRQCLQPRDTCYVASPGLPELVYSGYKPHANSWD
DFPPIKDLLDMVLEALPGSKFNSLLLNKYKGGNDNVGWHADDEKLYGPTPEIASVSFGCEREFLLKKRPMKSSQERRLDDEPTSKRLKKSSRFDQHSFIL
KHGSLLVMKGYTQRDWLHSVPKRAKAEATRINLTFRHVVV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G22260 oxidoreductase, 2OG-Fe(II) oxy... Potri.006G004500
[exp]
0 1
AT3G51850 CPK13 calcium-dependent protein kina... Potri.016G117200
[exp]
2.44 0.9230 CPK13.2
AT3G18060 transducin family protein / WD... Potri.015G041200
[exp]
5.29 0.9146
AT1G14020 O-fucosyltransferase family pr... Potri.008G090600
[exp]
6.00 0.9300
AT1G16170 unknown protein Potri.001G038200
[exp]
10.19 0.9225
AT1G26690 emp24/gp25L/p24 family/GOLD fa... Potri.017G086900
[exp]
10.24 0.8991
AT4G14420 HR-like lesion-inducing protei... Potri.010G073400
[exp]
10.48 0.9174
AT3G19460 Reticulon family protein (.1.2... Potri.001G300400
[exp]
11.61 0.9122
AT3G09740 ATSYP71, SYP71 syntaxin of plants 71 (.1) Potri.006G129500
[exp]
13.96 0.9225 Pt-SYP71.3
AT4G29240 Leucine-rich repeat (LRR) fami... Potri.006G152800
[exp]
14.69 0.8915
AT1G12840 ATVHA-C, DET3 DE-ETIOLATED 3, ARABIDOPSIS TH... Potri.001G322500
[exp]
14.86 0.9022 Pt-DET3.1

Potri.006G004500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.