Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47710 271 / 1e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70790 145 / 2e-44 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G73580 140 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G17980 135 / 7e-41 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 132 / 1e-39 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G66360 131 / 2e-39 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G01540 131 / 3e-39 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70810 129 / 2e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G37740 127 / 6e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT4G05330 130 / 5e-37 AGD13 ARF-GAP domain 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005300 [exp] 311 / 2e-110 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.017G125500 [exp] 140 / 4e-43 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 136 / 3e-41 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G047100 [exp] 134 / 2e-40 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G131500 [exp] 132 / 1e-39 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G110900 [exp] 127 / 2e-37 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.001G372000 [exp] 128 / 2e-36 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 125 / 3e-35 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.003G198301 [exp] 127 / 6e-35 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039113 [exp] 263 / 2e-91 AT5G47710 239 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10038745 [exp] 261 / 2e-90 AT5G47710 241 / 1e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10033585 [exp] 140 / 7e-43 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017629 [exp] 139 / 3e-42 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009684 [exp] 134 / 2e-39 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038539 [exp] 135 / 4e-39 AT4G21160 491 / 4e-176 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10009053 [exp] 133 / 5e-39 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042002 [exp] 129 / 4e-38 AT1G48590 240 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10024165 [exp] 135 / 2e-37 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10016347 [exp] 135 / 3e-37 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.006G004600.3 pacid=42770473 polypeptide=Potri.006G004600.3.p locus=Potri.006G004600 ID=Potri.006G004600.3.v4.1 annot-version=v4.1 ATGGGGGAGCAGTTAGGATTGCTAAAAGTTACAGTTGTACTAGGGAGAAGATTGGTTATTAGGGATTTCAAGACTAGCGATCCTTATGTAGTACTCAAGC TGGGCAATCAGACAGCAAAGACCAAGGTTATTAATAGTTGTCTTAATCCAGTTTGGAATGAAGAGCTAAGTTTCTCACTCAGAGAACCTGTTGGAGTTCT AAGTTTGGAAGTATTTGATAAAGACCGTTTCAAGGCAGATGACAAGATGGGACATGCTCACCTCAACCTACAACCAATTGCATCTGCAGCTAGATTGAAG CAGTTTGCAAAGGTTTCTTCAGGCGAGACAATTTTAAGGAAGGTTGTTCCTGATACTGACAATTGTCTTGCTCGTGAAAGCTCAATTAGTTGCATAAATG GTGAAGTGGTGCAGAGTGTTTGGTTGAGGCTCTGTGCAGTTGAGTCCGGGGAGATAGAACTAAAGATCAAGTTAATTGATCCTCCTGTTGCTTCTTCAAA GTAG
AA sequence Show only first row Show all	>Potri.006G004600.3 pacid=42770473 polypeptide=Potri.006G004600.3.p locus=Potri.006G004600 ID=Potri.006G004600.3.v4.1 annot-version=v4.1 MGEQLGLLKVTVVLGRRLVIRDFKTSDPYVVLKLGNQTAKTKVINSCLNPVWNEELSFSLREPVGVLSLEVFDKDRFKADDKMGHAHLNLQPIASAARLK QFAKVSSGETILRKVVPDTDNCLARESSISCINGEVVQSVWLRLCAVESGEIELKIKLIDPPVASSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47710			Calcium-dependent lipid-bindin...		Potri.006G004600 [exp]	0	1
					Potri.015G025700 [exp]	2.44	0.8016
					Potri.014G005200 [exp]	2.82	0.7858
AT5G41840			F-box/RNI-like superfamily pro...		Potri.006G244700 [exp]	8.94	0.7358
AT5G54855			Pollen Ole e 1 allergen and ex...		Potri.011G137100 [exp]	9.94	0.7689
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Potri.001G108300 [exp]	18.33	0.7497
AT4G29905			unknown protein		Potri.008G007800 [exp]	22.64	0.7102
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Potri.002G224800 [exp]	23.97	0.7048	Pt-SMT3.1
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Potri.017G038700 [exp]	24.49	0.7028	SDG943
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.009G123400 [exp]	27.12	0.6893
AT2G23090			Uncharacterised protein family...		Potri.002G120100 [exp]	29.66	0.7086

Compare expression of checked genes

Potri.006G004600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.