Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G47690	1682 / 0		binding (.1.2.3)
AT1G77600	505 / 2e-152		ARM repeat superfamily protein (.1.2.3)
AT4G31880	184 / 3e-47		unknown protein
AT1G15940	173 / 2e-43		Tudor/PWWP/MBT superfamily protein (.1)
AT1G80810	154 / 5e-38		Tudor/PWWP/MBT superfamily protein (.1.2)
AT5G10950	84 / 2e-16		Tudor/PWWP/MBT superfamily protein (.1)
AT4G02070	58 / 6e-08	ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
AT1G05830	52 / 3e-06	SDG30, ATX2	SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
AT4G32620	50 / 3e-05		Enhancer of polycomb-like transcription factor protein (.1.2)
AT4G32970	49 / 4e-05		unknown protein

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.016G005400 [exp]	2642 / 0	AT5G47690	1698 / 0.0	binding (.1.2.3)
Potri.002G084300 [exp]	623 / 0	AT1G77600	1136 / 0.0	ARM repeat superfamily protein (.1.2.3)
Potri.006G263300 [exp]	197 / 5e-51	AT4G31880	424 / 8e-133	unknown protein
Potri.018G020400 [exp]	184 / 5e-47	AT4G31880	389 / 3e-120	unknown protein
Potri.001G046500 [exp]	155 / 7e-38	AT4G31880	267 / 1e-76	unknown protein
Potri.018G109600 [exp]	142 / 4e-34	AT4G31880	180 / 3e-47	unknown protein
Potri.006G186700 [exp]	139 / 4e-33	AT4G31880	167 / 8e-43	unknown protein
Potri.003G181300 [exp]	134 / 2e-31	AT1G80810	231 / 3e-64	Tudor/PWWP/MBT superfamily protein (.1.2)
Potri.014G121701 [exp]	58 / 7e-08	AT4G02070	1402 / 0.0	MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10039082 [exp]	1822 / 0	AT5G47690	1661 / 0.0	binding (.1.2.3)
Lus10038777 [exp]	1718 / 0	AT5G47690	1579 / 0.0	binding (.1.2.3)
Lus10025655 [exp]	469 / 6e-140	AT1G77600	899 / 0.0	ARM repeat superfamily protein (.1.2.3)
Lus10018180 [exp]	452 / 2e-134	AT1G77600	864 / 0.0	ARM repeat superfamily protein (.1.2.3)
Lus10017121 [exp]	188 / 3e-48	AT4G31880	473 / 2e-152	unknown protein
Lus10018332 [exp]	186 / 1e-47	AT4G31880	464 / 2e-149	unknown protein
Lus10002307 [exp]	109 / 3e-24	AT4G31880	214 / 4e-61	unknown protein
Lus10026078 [exp]	107 / 6e-24	AT4G31880	228 / 1e-66	unknown protein
Lus10030133 [exp]	54 / 3e-07	AT1G15940	63 / 4e-11	Tudor/PWWP/MBT superfamily protein (.1)
Lus10041252 [exp]	55 / 8e-07	AT4G32620	923 / 0.0	Enhancer of polycomb-like transcription factor protein (.1.2)

PFAM info

Representative CDS sequence

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>Potri.006G004750.1 pacid=42768208 polypeptide=Potri.006G004750.1.p locus=Potri.006G004750 ID=Potri.006G004750.1.v4.1 annot-version=v4.1

ATGGAAGAGGAAAAGAAGCTTGAAGAGAAGTTAAAGGAGGTGGGATCCAAGCTGGAAACACTTCCTTCTACTAAAGATGGTGTTATTAAGCTGTTAAAGC

AAGCTGCTGCTTGTCTTTCTGAGATGGACCAATCACCGCTGGTTTCAGTGTCAGAGTCAACGCAGCCGTTTCTTGATGCAATTGTAAAGCCAGATTTGTT

GAAGCATCAAGATAGGGATGTTAAGCTTCTAGTTGCAACCTGTATTTGCGAGATAACCCGGATTACTGCACCTGAAGCTCCATACAGTGATGAAGTTTTA

AAGGATATTTTCCACTTGATCGTAGGCACTTTCAGTGGGTTAAGTGATACTGGCAGTCCATCATTTGGAAGGAGAGTTGTTATTTTGGAGACTCTTGCCA

AATATCGGTCATGTGTTGTGATGCTGGATCTCGAATGTAATGATCTGGTGAATAAGATGTGCAGTACATTTTTTACTGTCGCCAGTGATGATCATCAAGA

AAGTGTATTATCTTCAATGGAAACAATAGTGGTTGTTCTCATAGAAGAAAGTGAGGATGTCCGAGAGGATCTTCTACTTATTATCTTATCTGTATTAGGT

CGTAACAGAAATGATATCTCGATGGCAGGGAGGAAACTTGCCTTGAATGTCATAGAGCATTGTGCTGGAAAACTTGAAGCTGGGATAAAGCAGTTCCTCA

TATCATCAATGTCAGAAGATAGCAGGTTGGAAAATTGTAAAATCGACTACCATGAAGTTATATATGATATTTACCGTTGCGCTCCTCAGATCCTATCAGG

AGCCATTCCATACCTCACAGGAGAGCTGCTGACTGACCAGCTAGACACTCGTTTAAAAGCAGTGGGGTTGGTTGGGGATCTATTTGCTTTGCCTGGGTCT

GCCATCACAGAAACATTTCAGTCTATCTTTTCTGAGTTTTTGAAAAGATTGACTGATAGAGTAGTTGCTGTTCGGATGTGTGTCCTTGAACGTGTCAAAA

GCTGTCTTTTGTCAAATCCTTTTCGAGCTGAGGCAGCTCAAATCATCTCTGCCCTTTGTGACCGACTGTTGGACTATGATGAAAATGTTCGAAAGCAAGT

CGTTGATGTACTCTGTGATGTAGCATGTCATACCTTGAATTCTGTCCCTGTTGAAACTATAAAACTAGTGGCAGAGCGTCTTCGAGATAAATCTCAACTT

GTTAAAAGATATACTATGGAGAGACTGGCTGAGATATTCAGGGTTTATTGTGTAAAGTCCTCTGATGGATCAGTCAATCCTGGTGAATTTGATTGGATTC

CTGGAAGGATTTTGAGATGTTTGTATGACAAGGATTTCAGATCAGATACAATTGAATTTGTTCTTTGTGGGTCTCTGTTTCCAACTGAATGTGCAGCAGA

AGATAGAAGTAAACATTGGGTAAGTGTCTTCTCTGTATTAGACAAAGTTGAGGTGAAAGCTCTTGAGAAGATCCTGGAGCAGAAGCAAAGGTTACAGCAA

GAGATTCTGAGGTATCTATCACTTAGGCAGATGCGTCAGGATGGAGATACTCCTGAGATCCAAAAAAAGATTCTGTTCTGCTTTCGGATTATGTCTCGCT

CCTTTGCAGAGCCTGCCAAGACTGAGGAGAATTTTCAGATACTTGATCAATTGAAAGATGTCAATATCTGGAAGATTTTAACAAATCTACTGGATCCAAA

TACCAGCTTCCATCAAGCTTGCACTGGCCGGGATGATTTACTTAAAATACTTGGCGAGAAACACCGACTCCATGATTTTTTGAGCAGTCTTTCCATGAAG

TGTTCTTATTTACTTGTCAACAAGGAGCATGTGAAAGAAATCATTTTGGATGTCAACAAACATAATTCAGCTGGAAATATGAATTTTACAAAATCTTGTT

TGGATTTACTGGTGATTCTTGCACGCTTCAGTCCATTGCTGCTTGGTGGGTCCGGGGAAGAGCTTATAAATTTTTTGAAAGATGACAATGAAATAATAAA

AGAAGGTGCTTTGCATGTTTTGGCAAAGGCTGGTGGTACGATCCGAGAACAACTAGCAGAGTCATCAAGTTCAATTGACCTTATGTTGGAGAGGCTTTGC

TTAGAGGGTAGCCGAAGGCAGGCCAAGTATGCTGTGCATGCCCTAGCAGCAATAACAAAGGATGATGGGCTCAAGTCCCTCTCTGTTTTGTACAAGAGAC

TCGTGGACATGCTGGAGGAGAAGACACATTTGCCTGCTGTACTACAATCTCTGGGATGCATTGCACAGACTGCAATGCCAGTTTTTGAAACTAGAGAAAA

TGAAATTGAAGAATTCATTAAGAGCAAAATTCTAGAACGCAGTAGTAAACCAGAAGATAATACAAAAGCATGCTGGGATGACAGAAGTGAACTATGTTTG

TTGAAGGTTTATGGACTCAAGACATTGGTCAAGAGCTACTTGCCAGTTAAAGATGTACAACTCCGTCGTGGTATTGACGGCCTTCTGGAAATCCTTAGAA

ACATACTTCTGTTTGGAGAGATATCGAAAGATATTGAATCAAGTTCAGTTGATAAGGCCCACTTGAGGTTTGCTTCTGCTAAGGCAGTTCTTCGTTTGTC

AAAGCATTGGGATCAAAAGATACCTGTTGATCTCTTCCACTTAACTTTGAGGACACCAGAGATTGCTTTCCCCCAAGCTAGGAAGCTGTTTCTGATTAAA

GTTCATCAATACATCAAGGACCGAGTTCTGGATACAAAGTATGCTTGTGCCTTCTTATTTAATACCACAGGATCCAAGTCCCTTGATTTTGAAGAGGAGA

AGCAGAATCTTGCTGATATTATTCAGATGCACCAGCAAGCTAGGACACGACAAGTCTCTGTGCAAAGTGATGCAAATCCCTCGGCAGTTTATCCTGAATA

CATTATCCCCTATTTGGTCCACGCTCTTGCTCATCAATCATGTCCGAATGTAAATGAGTGCAAGGATGTTAAAGCATTTGAACCAATATACCGGCAATTA

TACTTGATCGTTTCTATGCTAGTTCATAAAGATGAAGGTGTCAAGTTAGAAGCTGGTACCGACAAGGAGAAGGAAAAGGAGAAGGAGAAGGAGAAGGAGA

AGGAGAAGGAGAAGGACAAAGAGGAGAAGGAGAAGGAGAAAGACAATGACAAAGACAAAGAGACTAACTCTCTAATAGCTTCCATCTTTCAGAATATTAA

GTGCTCGGAAGATGTAGTTGATCGAGAGAAGTCGAAGAATTCACATGCTATCTCTGTACTTGGGCTGTCAATAATCAAGCGCTTGGTTCAAAAGGAGGAT

GAAAGCTTGCTTCCATCAGTTTCTTTGCCTCCAATGCTTTACAAAACATATGAATATAAAGAAGGCGAAGAAGCTCTGGCAAATGAAGGGAAAGTGTGGT

TGGCTGATGAAAGTGTCTTGACTCACTTTGAATCACTTAAGTTCGAAACTGATGGAAATGCTAGTTCACATGCTGCCAGGGATGAGGATGTAAATGACAG

TGAAAGAGAAGCTAATGAAGTGCCTCTTGGGAAAATGATCAAGCAATTAAAATCCCAGGGAAATAAAGGTGGAAAAACTAAAAAGAACAGCTCTTCATTG

GCTAAAGCAAAAGATGCTGAAAATGATGTTGATATCTTGAAGATGGTCAGGGAGATAAATTTGGATAATCTGGGGCTATCTAATAAATTTGAGTCAAGCA

ATGGACATAAAGATCCAAGTGAGAAGACAAAGTCAGAATCAGAGCATCAAAAAGTGAAAAAAGGAAACATTACTGTGACACCTGTGCCTGTACCCAAACG

CCGAAGATCATTATCTGCTCATAGTGCTTCTAGATTGCCCCGAAGTTCTTTAATGGCTCCTTCAAGAGCTCCAGAGGATGATTCAAGCCCTGATTTGAAG

GGAAAAAAACTCAAAGCTGAGCGCACTGGATCTGAATTGTTGGTATATAGCATTCAAAAGAAGAAAAATGTCACATCCAAACTCAAAGGAAAAAACTCTG

AGTTGGGTGACAATGGCAGGGAAAATGAAGTTGGAGAATCTGATGATGATATTCCGGTGCAGCCTGGTATGCTAATGGAGACTGATAAGATCAATACAAC

AAATAGTCCTCAGTCTTTGACTAGTTCTATGAAGAAGCGGAAAAGAAGAAGTGTAGCAGGGTTGGCCAAGTGCCCAACAAAGAAAAGTGGCATTGATATC

GAGGATATTATTGGTTACAGAATAAAAGTTTGGTGGCCCATGGATAAGAAGTTTTATGGAGGCACCATCAAGTCTTATGATCCTTTGAAAAGGAAACATG

TGATATTATATGATGATGGAGATATAGAAGTACTCCGTTTGGATAAAGAGCGCTGGGAGCTCGCTGACAATGGCCCCAAGCGCACAAAGAAATCAATTTC

ATTTAAGCGCACCCCTTCCAAGGACATGTCACCTGCACCAAAAAATAGAAGTCCGAGTAGTTTAAGTCAGAATAAGAAGTCAGTGACAATTGTTAAAAAG

AAAAGAACTCCAACAAAAAACTCAAAGCGTGTGTATAAAGAGCCGAAGGACAAAGTGGATTCTGATGTATCAAGCCCTGAACATGCCGTGGCATCTGAAG

GAGATAAACTCAAATTAGATGATCCTAAAGGGGATCATGCTGAAAAGGTGTCCCAGGGCATGACAGATGTGGAGGAATCTGACAAGGAAGTGGTGTCAAT

TTCCAAAGGTAAACACTTGGAAGACACAGAGGAAAGGTCAAATAATTCTGAGGAATCTGATGGAGAAGAGAAATCCAATTTTGAAGCTGAAGTTTCTGAA

GATATGGAAAGCACACCGCAAGATGATAAAAAAGGTGATGACGGAGAGGAATCCCATTCAGAAGAGAAAGAAGTAGATGAATCAAGTGAAGCCTTGGGAG

TGGAAGCTAATAAAGAAAAATCAGATTCTGAAGGGAATCAAGATGTAGACATCAGGAAACCTAGCAGAAAGCCAAAGAAGCTTAGTAAGAAATCATCAAA

TGCTGAAGATGCTGACATCTCTGATGATGAACCTCTTGTACTTGCATCTAACCCTCTCTTTAGTTTATGCATTATAATATTGGAGAAATTCTATGACTCC

AAGAGTAGCTGCGAATAG

AA sequence

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>Potri.006G004750.1 pacid=42768208 polypeptide=Potri.006G004750.1.p locus=Potri.006G004750 ID=Potri.006G004750.1.v4.1 annot-version=v4.1

MEEEKKLEEKLKEVGSKLETLPSTKDGVIKLLKQAAACLSEMDQSPLVSVSESTQPFLDAIVKPDLLKHQDRDVKLLVATCICEITRITAPEAPYSDEVL

KDIFHLIVGTFSGLSDTGSPSFGRRVVILETLAKYRSCVVMLDLECNDLVNKMCSTFFTVASDDHQESVLSSMETIVVVLIEESEDVREDLLLIILSVLG

RNRNDISMAGRKLALNVIEHCAGKLEAGIKQFLISSMSEDSRLENCKIDYHEVIYDIYRCAPQILSGAIPYLTGELLTDQLDTRLKAVGLVGDLFALPGS

AITETFQSIFSEFLKRLTDRVVAVRMCVLERVKSCLLSNPFRAEAAQIISALCDRLLDYDENVRKQVVDVLCDVACHTLNSVPVETIKLVAERLRDKSQL

VKRYTMERLAEIFRVYCVKSSDGSVNPGEFDWIPGRILRCLYDKDFRSDTIEFVLCGSLFPTECAAEDRSKHWVSVFSVLDKVEVKALEKILEQKQRLQQ

EILRYLSLRQMRQDGDTPEIQKKILFCFRIMSRSFAEPAKTEENFQILDQLKDVNIWKILTNLLDPNTSFHQACTGRDDLLKILGEKHRLHDFLSSLSMK

CSYLLVNKEHVKEIILDVNKHNSAGNMNFTKSCLDLLVILARFSPLLLGGSGEELINFLKDDNEIIKEGALHVLAKAGGTIREQLAESSSSIDLMLERLC

LEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRENEIEEFIKSKILERSSKPEDNTKACWDDRSELCL

LKVYGLKTLVKSYLPVKDVQLRRGIDGLLEILRNILLFGEISKDIESSSVDKAHLRFASAKAVLRLSKHWDQKIPVDLFHLTLRTPEIAFPQARKLFLIK

VHQYIKDRVLDTKYACAFLFNTTGSKSLDFEEEKQNLADIIQMHQQARTRQVSVQSDANPSAVYPEYIIPYLVHALAHQSCPNVNECKDVKAFEPIYRQL

YLIVSMLVHKDEGVKLEAGTDKEKEKEKEKEKEKEKEKDKEEKEKEKDNDKDKETNSLIASIFQNIKCSEDVVDREKSKNSHAISVLGLSIIKRLVQKED

ESLLPSVSLPPMLYKTYEYKEGEEALANEGKVWLADESVLTHFESLKFETDGNASSHAARDEDVNDSEREANEVPLGKMIKQLKSQGNKGGKTKKNSSSL

AKAKDAENDVDILKMVREINLDNLGLSNKFESSNGHKDPSEKTKSESEHQKVKKGNITVTPVPVPKRRRSLSAHSASRLPRSSLMAPSRAPEDDSSPDLK

GKKLKAERTGSELLVYSIQKKKNVTSKLKGKNSELGDNGRENEVGESDDDIPVQPGMLMETDKINTTNSPQSLTSSMKKRKRRSVAGLAKCPTKKSGIDI

EDIIGYRIKVWWPMDKKFYGGTIKSYDPLKRKHVILYDDGDIEVLRLDKERWELADNGPKRTKKSISFKRTPSKDMSPAPKNRSPSSLSQNKKSVTIVKK

KRTPTKNSKRVYKEPKDKVDSDVSSPEHAVASEGDKLKLDDPKGDHAEKVSQGMTDVEESDKEVVSISKGKHLEDTEERSNNSEESDGEEKSNFEAEVSE

DMESTPQDDKKGDDGEESHSEEKEVDESSEALGVEANKEKSDSEGNQDVDIRKPSRKPKKLSKKSSNAEDADISDDEPLVLASNPLFSLCIIILEKFYDS

KSSCE

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Only top 10 genes are shown Show all Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description	Locus	MR	r	Symbol
AT5G47690			binding (.1.2.3)	Potri.006G004750 [exp]	0	1
AT5G47690			binding (.1.2.3)	Potri.016G005400 [exp]	1.41	0.9162
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...	Potri.010G178600 [exp]	2.44	0.9113
AT3G19190		ATATG2	autophagy 2 (.1)	Potri.004G141700 [exp]	6.00	0.8787
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...	Potri.009G155200 [exp]	6.63	0.9009	TTN8.2
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...	Potri.006G262200 [exp]	7.74	0.8579	PKL.2
AT5G07400	FHA		forkhead-associated domain-con...	Potri.012G111800 [exp]	8.94	0.8720
AT1G68030			RING/FYVE/PHD zinc finger supe...	Potri.016G053300 [exp]	9.21	0.8494
AT2G47070	SBP	SPL1	squamosa promoter binding prot...	Potri.002G188700 [exp]	9.53	0.8578
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...	Potri.016G002100 [exp]	10.24	0.8317
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...	Potri.001G008800 [exp]	10.95	0.8446

Potri.006G004750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.006G004750 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.006G004750 coexpression network