Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47680 312 / 2e-105 AtTRM, TRM10 tRNA modification 10, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005500 [exp] 451 / 1e-160 AT5G47680 329 / 5e-112 tRNA modification 10, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038778 [exp] 350 / 1e-120 AT5G47680 371 / 1e-128 tRNA modification 10, unknown protein Lus10039081 [exp] 339 / 2e-115 AT5G47680 358 / 1e-122 tRNA modification 10, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [poplar] [flax] SPOUT PF01746 [poplar] [flax] tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G004900.1 pacid=42769892 polypeptide=Potri.006G004900.1.p locus=Potri.006G004900 ID=Potri.006G004900.1.v4.1 annot-version=v4.1 ATGGAGGAAGAGAAAGAGAGCGAACAAAATGACCAAAACACCCTCGAGAGCCAACCCAATTCACAGCCCACTCCACTCTCCAAAAACGCACAAAAGAAAC TGCTGAAGCAGCAAAAATGGGAAGCAAAGAAAGCAGAGAAGAAAGCACAAGTGAAGGAGCAAAAAATGAAAGAAGCAGAGAGAAAGAGAAAAGAATGGGA GGAGAGACTATCAAGCTGTGCAAGTGAAGAAGAAAGGTTGAAGCTTATAGAGTCAAGGAGAGAGTTAAGGAAAGAGAGAATGGAGAAGAGGGCAGAAGAG AAAGAAGACAAAGTGCAGAGGCTTAGTAAGGCTAAAGAATTTGGTCAGAATATAGTGATTGATCTTGAGTTTGCTGATCTCATGACTAACAGTGAGATTC ACAGTCTTGTTCAACAGATTATGTATTGTTATGCTGTGAACAGAAGATGTACATCCCCCGGTCACCTCTGGTTGACTGGGTGCAGGGGGGAAATGGAGAT CCAATTGCAAAGGCTCCCAGGATTTGATAAATGGATTATTGAGAAGGAAAGTCAGTCATATATTGATGCATTGCAAGATCAAAAGGAGAATTTGGTGTAT CTTACAGCAGATTCTGAAACAGTGCTAGATGAACTCGATCTTAAGAAAATATATATCATTGGTGGGTTAGTAGATCGGAATCGGTGGAAAGGCATAACCA TGAAGAAAGCAAGTGAGCAAGGAATCCAAACAGCAAAACTTCCTATAGGCAGTTACTTGAAGATGTCAAGTTCTCAGGTACTTACTGTAAACCAAGTGGT AGAGATCCTACTCAAGTTTGTGGAAATAAAAGATTGGAAAGCTTCCTTCTTTCAAGTAATTCCTCAAAGGAAAAGAGGTGAAACTGATTCAGAAGAACTC CAGGGAGTTGACGGGGAAGAGTTGGAGAACGAAGATGACCCGTCTGATAAGAAAAAGCGATGCATTGAAGTTCGTTCCACGCAGTAG
AA sequence Show only first row Show all	>Potri.006G004900.1 pacid=42769892 polypeptide=Potri.006G004900.1.p locus=Potri.006G004900 ID=Potri.006G004900.1.v4.1 annot-version=v4.1 MEEEKESEQNDQNTLESQPNSQPTPLSKNAQKKLLKQQKWEAKKAEKKAQVKEQKMKEAERKRKEWEERLSSCASEEERLKLIESRRELRKERMEKRAEE KEDKVQRLSKAKEFGQNIVIDLEFADLMTNSEIHSLVQQIMYCYAVNRRCTSPGHLWLTGCRGEMEIQLQRLPGFDKWIIEKESQSYIDALQDQKENLVY LTADSETVLDELDLKKIYIIGGLVDRNRWKGITMKKASEQGIQTAKLPIGSYLKMSSSQVLTVNQVVEILLKFVEIKDWKASFFQVIPQRKRGETDSEEL QGVDGEELENEDDPSDKKKRCIEVRSTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Potri.006G004900 [exp]	0	1
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.015G130900 [exp]	3.16	0.8524
AT3G24080			KRR1 family protein (.1.2)		Potri.001G125200 [exp]	3.46	0.8670
AT3G54980			Pentatricopeptide repeat (PPR)...		Potri.006G250700 [exp]	7.14	0.7957
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Potri.016G005500 [exp]	7.48	0.8514
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.012G069100 [exp]	8.12	0.7711
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.005G075000 [exp]	9.00	0.8518
AT1G74250			DNAJ heat shock N-terminal dom...		Potri.009G018400 [exp]	13.60	0.8466
AT4G22350			Ubiquitin C-terminal hydrolase...		Potri.016G014000 [exp]	14.89	0.7074
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.011G161901 [exp]	16.61	0.7803
AT1G75335			unknown protein		Potri.013G126701 [exp]	20.04	0.8425

Compare expression of checked genes

Potri.006G004900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.