Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30825 1122 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 194 / 3e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 173 / 2e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 169 / 1e-42 PGR3 proton gradient regulation 3 (.1) AT1G63130 156 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 157 / 2e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G12100 156 / 5e-39 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63400 154 / 5e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 155 / 1e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 154 / 5e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297300 [exp] 193 / 5e-51 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 184 / 3e-48 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 179 / 4e-46 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 179 / 7e-46 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 178 / 1e-45 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.003G105700 [exp] 174 / 1e-44 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.019G049400 [exp] 161 / 2e-40 AT5G27270 1179 / 0.0 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G249800 [exp] 160 / 2e-40 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G123900 [exp] 162 / 3e-40 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035818 [exp] 1177 / 0 AT4G30825 1049 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036601 [exp] 566 / 0 AT4G30825 499 / 4e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036600 [exp] 473 / 4e-161 AT4G30825 428 / 3e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 185 / 6e-48 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 178 / 1e-45 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10002107 [exp] 170 / 2e-43 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 167 / 3e-42 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006962 [exp] 163 / 4e-41 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 160 / 3e-40 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 160 / 4e-40 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.006G005100.2 pacid=42770377 polypeptide=Potri.006G005100.2.p locus=Potri.006G005100 ID=Potri.006G005100.2.v4.1 annot-version=v4.1 ATGGCATCATTTAGATTACCACCAACTTCTTTAGACTCATTTTATTCAAACAAGTCAAATTTCTCTACAAACCCACTTCATTTCCCTGGCAATTCTACAC TTTTTTCCATTTCTAGTTGTATTCATTTGATCACTTCTTTGAGTAGATTTAGTGCTGTTAAGGTGTCTAGAATCGAAACTGAATTGTCTGAAAAGGACCC TTTTTTATCAACTTCAGAGGGTTTGGTTAGTGAGAATGAACAAAAGGACCTGGATTCTGAACATGAGAGAAAAATTAAGTACAAGGGCGCTAAGAAAGGG ACTAAGAGGGAAGTGGGTTTTAAGTTTAGTTGTAAAAGGAATGGTAGCAGGCTAGAAAGGGAGGGCTTTTTCGTGTATGATGGTGAGTTGGATGTTAATT ACTCTGTTGTTGGGTCTAATATGAGCTTAGAGCAATGTAATGATGTTTTGAAACGGCTCGAGAAGGGTACCAGTGATGATAAAACTTTGAGGTTTTTTGA GTGGATGAGGAGTAATGGGAAGCTTGAAAAGAATGTTAGTGCTTTCAATGTTGTTTTTCGAGTGTTGGGTAGGAGGGAGGATTGGGATACTGCTGAGAGG ATGATTAGGGAAATGAGGGAGAGTTTTGGTTCTGAGCTGGATTGTAGAGTCTTTAACACACTTATTTACTCGTGCTCTAAACGGGGGAGTGTGGAGTTGA GTGGGAAATGGTTTAGGATGATGTTGGAGCTTGGGGTTCAGCCAAATGTCGCTACTTTTGGTATGGTAATGGGGCTTTACCAAAAGGGTTGGAATGTTGA GGAGGCAGAATTTTCTTTTGCTCAAATGAGGAGTTTTGGGATAATATGTCAGTCCGCATACTCGGCAATGATCACTATTTATACCCGTTTGAGTTTGTAT GACAAGGCAGAAGAGGTTATCGGTTTGATGAGAGACGATAAGGTGGTGTTAAATTTGGAGAATTGGTTGGTTTTGCTTAATGCTTATAGTCAGCAAGGGA AGTTAGAGAAGGCCGAGCAGCTGTTGGTTTCAATGCAAGAAGCCAAGTTTTCCCCTACTATTGTTGCATACAATATATTGATCACTGGTTACGGAAAGGC ATCCAATATGGTTGCCGCTCAACGGCTGTTCTCAGGCATCCAAAATGCTGGATTAGAGCCTGATGATACAACCTACCGTTCCATGATTGAAGGTTGGGGT CGTGTTGGCAATTATAAGGAGGCAGAATGGTACTATAAGGAGCTCAAGCGGCTGGGATTCAAGCCTAACTCACCCAACTTGTACACGCTAATAAATTTGC AAGCTGAGCATGGGGATGAAGAAGGTGCTTGCAGAACTCTTGATGATATGCTGAAGATAGGGTGCCAGTATTCCTCAATCCTTGGAACTCTTTTGAAAGC ATATGAGAAGGTCGGAAGGATTGATAAAATTCCTTTTCTTTTGAAAGGTTCCTTCTATCAACATGTTACCGTTAACCAGAATTCATGCTCCATTCTTGTC ATTGCTTATGTAAAAAACCTGTTGGTTGATGAGGCTATAAAATTGTTGGGTGACAAAAAATGGAATGATCCAGTTTTTGAGGATAACTTGTATCATTTGT TAATCTGCTCATGCAAGGAGCTGAGCCATCTTGACAGTGCTGTTAAGATATACTCTTTGATGCCCAAATCTGATGATAGACCAAATTTGCACATCTCGTG TACCATGATTGACATTTACACTACTATGGGTCAATTTAATGAGGGGGAAAAACTTTATATGAAGTTAAAATCTTCTGGAATTGGTTTAGATGTGATTGCT TTCAGCATTGTCATAAGAATGTATGTCAAAGCTGGATCTTTGAAGGATGCTTGTTCTGTTCTAGAAACAATGGAGAAGGAAAAGGACATGGTTCCAGACA TTTATCTGTTCCGGGACATGCTTCGCATTTACCAACAGTGTGGAATGATGGATAAGTTAAATGATCTGTATTTCAAAATCTTGAAGAGTGGAGTTGTTTG GGATCAGGAGTTGTATAATTGCCTCATAAACTGCTGTGCTCGTGCTCTGCCAGTTGGTGAACTTTCCAGACTTTTCAATGAGATGCTTCAGCGTGGTTTT GATCCTAATACCATTACCTTCAATGTCATGCTTGATGTTTATGCTAAGGCTAAGCTTTTCAATAAAGCTAGGGAACTGTTCATGATGGCTAGAAAACGAG GATTGGTTGATGTAATCTCTTACAATACCATTATAGCTGCTTATGGACGCAAAAGAGACTTCAAAAATATGGCATCAACCATACACACTATGCAATTTGA TGGCTTTTCAGTTTCCCTCGAAGCCTACAACTGTGTGTTGGATGCCTACGGGAAAGAAGGTCAGATGGAGAGTTTTAGAAGTGTCTTGCAGAGAATGAAG AATTCAAGCTGTACTGCTGACCATTATACATACAACATTATGATGAATATCTATGGAGAGCTAGGGTGGATTGATGAAGTTGCAGGTGTGCTCACAGAAC TGAGAGAATGTGGGCTGGGACCTGATTTGTGTAGCTATAATACACTGATAAAGGCATATGGAATTGCTGGAATGGTTGAAGATGCTGTGGGTTTGGTCAA GGAAATGAGGCAAAATGGGGTAGAACCTGATAAGATAACCTACACCAATCTGATTACTACATTGCAGAAGAATGATAAATACTTGGAGGCTGTTAAATGG TCCTTGTGGATGAAGCAGAGGGGACTCTGA
AA sequence Show only first row Show all	>Potri.006G005100.2 pacid=42770377 polypeptide=Potri.006G005100.2.p locus=Potri.006G005100 ID=Potri.006G005100.2.v4.1 annot-version=v4.1 MASFRLPPTSLDSFYSNKSNFSTNPLHFPGNSTLFSISSCIHLITSLSRFSAVKVSRIETELSEKDPFLSTSEGLVSENEQKDLDSEHERKIKYKGAKKG TKREVGFKFSCKRNGSRLEREGFFVYDGELDVNYSVVGSNMSLEQCNDVLKRLEKGTSDDKTLRFFEWMRSNGKLEKNVSAFNVVFRVLGRREDWDTAER MIREMRESFGSELDCRVFNTLIYSCSKRGSVELSGKWFRMMLELGVQPNVATFGMVMGLYQKGWNVEEAEFSFAQMRSFGIICQSAYSAMITIYTRLSLY DKAEEVIGLMRDDKVVLNLENWLVLLNAYSQQGKLEKAEQLLVSMQEAKFSPTIVAYNILITGYGKASNMVAAQRLFSGIQNAGLEPDDTTYRSMIEGWG RVGNYKEAEWYYKELKRLGFKPNSPNLYTLINLQAEHGDEEGACRTLDDMLKIGCQYSSILGTLLKAYEKVGRIDKIPFLLKGSFYQHVTVNQNSCSILV IAYVKNLLVDEAIKLLGDKKWNDPVFEDNLYHLLICSCKELSHLDSAVKIYSLMPKSDDRPNLHISCTMIDIYTTMGQFNEGEKLYMKLKSSGIGLDVIA FSIVIRMYVKAGSLKDACSVLETMEKEKDMVPDIYLFRDMLRIYQQCGMMDKLNDLYFKILKSGVVWDQELYNCLINCCARALPVGELSRLFNEMLQRGF DPNTITFNVMLDVYAKAKLFNKARELFMMARKRGLVDVISYNTIIAAYGRKRDFKNMASTIHTMQFDGFSVSLEAYNCVLDAYGKEGQMESFRSVLQRMK NSSCTADHYTYNIMMNIYGELGWIDEVAGVLTELRECGLGPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRQNGVEPDKITYTNLITTLQKNDKYLEAVKW SLWMKQRGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30825			Tetratricopeptide repeat (TPR)...		Potri.006G005100 [exp]	0	1
AT4G31850		PGR3	proton gradient regulation 3 (...		Potri.006G264800 [exp]	2.00	0.9560
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.011G144300 [exp]	3.31	0.9435
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	4.89	0.9583
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	4.89	0.9467
AT3G42630			Pentatricopeptide repeat (PPR)...		Potri.018G146900 [exp]	7.61	0.9328
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.001G277305 [exp]	13.56	0.9404
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	14.07	0.9456
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131300 [exp]	14.07	0.9468
AT4G02920			unknown protein		Potri.002G215800 [exp]	16.94	0.9454
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	19.18	0.9442

Compare expression of checked genes

Potri.006G005100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.