Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AHA6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42640 1543 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 1542 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT1G80660 1518 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT4G30190 1472 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 1460 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT5G57350 1445 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT2G24520 1420 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT5G62670 1412 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 1412 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT3G60330 1291 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188600 [exp] 1618 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1614 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G275000 [exp] 1512 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G165900 [exp] 1504 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 1502 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.018G006000 [exp] 1497 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.015G066000 [exp] 1413 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 1409 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.003G179800 [exp] 1386 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024105 [exp] 1521 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10001631 [exp] 1493 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 1492 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10003259 [exp] 1408 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1408 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10026224 [exp] 1363 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10042445 [exp] 1352 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10019593 [exp] 1351 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10040166 [exp] 1325 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1323 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G005900.1 pacid=42769023 polypeptide=Potri.006G005900.1.p locus=Potri.006G005900 ID=Potri.006G005900.1.v4.1 annot-version=v4.1 ATGGAAGATATAAAGAATGAGAGTATTGATCTTGAGAAAATTCCTATTGAAGAAGTGTTTGAAAAGCTAAAATGTACGAAAGAGGGGTTGAGGACAACAG AAGGTGAAGAGAGGCTTAGGATCTTTGGCCCCAACAAGCTTGAGGAGAAAAAGGAGAGCAAAATCCTCAAGTTCTTGGGCTTTATGTGGAATCCTTTGTC GTGGGTCATGGAGGCAGCTGCCATTATGGCCATTGTTTTGGCTAATGGAGGAGGCAAGCCACCGGATTGGCAAGACTTTGTTGGTATCATTGTGTTGCTT ATCATCAATTCCACCATCAGCTTCATTGAAGAAAACAATGCGGGTAACGCCGCCGCCTCTTTGATGGCTGGTCTTGCTCCTAAAACCAAGGTTTTGAGGG ATGGAAAATGGAGTGAGCAAGATGCAGCAATTTTGGTACCAGGAGATATAATTAGCATCAAGTTGGGAGATATTATCCCAGCTGATGCTCGTCTCATGGT AGGTGATCCGCTCAAGATCGATCAGTCTGCCTTAACTGGTGAGTCCCTTCCAGTCACAAAGTATCCCGGCAGCGGGGTTTACTCAGGATCAACCTGTAAG CAAGGTGAGATTGAGGCTGTTGTTATTGCGACGGGTGTTCATACCTTCTTCGGCAAGGCAGCTCACCTTGTAGACAGCACCAATAACGTCGGTCATTTCC AAAAGGTGTTGACTGCTATTGGTAACTTCTGTATCTGCTCAATTGCAATTGGTATGCTGATTGAGATCATAGTGATGTACCCAATCCAACACAGGAGGTA CAGAGATGGCATTGACAACCTCTTGGTGCTTCTCATTGGAGGTATCCCTATTGCCATGCCCACAGTCTTGTCAGTGACAATGGCTATTGGATCTCACCGC CTATCACAGCAAGGTGCCATCACCAAGAGGATGACTGCCATTGAAGAAATGGCTGGAATGGATGTCTTGTGCAGTGACAAGACTGGAACTCTCACCCTTA ACAAGCTTACTGTTGACAAGACTCTCATTGAGGTGTTTGTGAAGGACATGGACAAGGACACTCTTATATTACACGCTGCCAGGGCTTCTAGAACCGAGAA CCAGGATGCCATTGATGCTTCAATAGTTGGGATGTTGGGAGATCCCAGTGAGGCAAGATCAGGAATCATAGAGGTGCATTTCTTGCCCTTCAACCCTGTC GAAAAGCGCACTGCAATCACCTACTTTGATGGAAATGGTGATTGGTATAGAAGCAGCAAGGGAGCTCCCGAGCAGATTATTGAGCTCTGTGAACTCAAGG GGAATATTAGGAAAAAGGCTCATGAAATCATCAACAACTTTGCTGACCGTGGCCTTCGTTCCCTGGGAGTTGCTCGTCATAGAATACCAGAGAAGAACAA GGAAAGTGCAGGAGCACCATGGGAGTTTGTGGGTCTCTTGCCTCTTTTTGACCCTCCAAGGCATGATAGTGCTGAGACTATCCGCCGAGCACTTGACCTT GGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCAATTGGCAAAGAGACTGGCCGCAGGCTTGGCATGGGTACCAACATGTATCCTTCATCATCCC TCCTTGGTGATAACAAAGATGAATCAATTGCGTCCGTTCCAGTTGATGAGCTCATTGAGAAAGCTGATGGGTTTGCTGGCGTCTTCCCGGAGCACAAATA TGAGATTGTTAAGAAGCTCCAAGAGAGGAAGCACATTTGTGGAATGACAGGTGATGGTGTTAATGATGCGCCGGCATTGAAGAAGGCGGACATTGGTATT GCCGTGGCAGATGCAACTGATGCTGCCAGGAGTGCCTCAGACATTGTTTTGACAGAACCAGGATTGAGTGTGATTATCAGTGCTGTGCTGACAAGCAGAG CCATCTTCCAACGGATGAAGAACTACACAATCTATGCTGTTTCCATCACAATTCGTATTGTGTTGGGATTCTTGCTTGTTGCACTTATCTGGAAGTTTGA CTTCTCTCCATTCATGGTCCTCATCATTGCCATCCTCAATGATGGAACCATTATGACCATCTCCAAGGATAGAGTCAAGCCATCTCCTGTCCCTGACTCC TGGAAGCTTAAGGAAATTTTTGCCATGGGCGTTGTCCTTGGAACCTACTTGGCAATTATAACCGTGCTGTTCTTCTGGCTTGCTCATGGCACTGACTTCT TCTCCGATAAGTTCGGCGTGAGGTCAATCAGAGGTAAACCAGATGAGCTTACAGCAGCTCTCTACCTTCAAGTGAGCATCATCAGTCAAGCACTCATATT TGTGACCAGGTCAAGGAGCTGGTCCTTCACTGAACGCCCTGGTCTCTTGCTTGTCGGTGCCTTCCTTGCAGCGCAATTGGTGGCAACTGTCATTGCTGTG TATGCAAACTGGGGATTTGCAAGAATCCAAGGCATCGGTTGGGGATGGGCAGGAATAATCTGGATTTTCAGCATTATCACCTACATCCCTCTTGACATCC TCAAGTTCATCACCCGCTATGCATTGACCGGGAAGGCTTGGGATAATCTGCTAGAAAACAAGACTGCTTTCACTACCAAGAAGGATTATGGAAAGGGTGA AAGGGAGGCTCAATGGGCTACAGCTCAGCGCACGCTTCATGGTCTCCAGTCCCCAGAAACCATGAAAAATGACAAGGCCAGCTATAGGGAGTTGAGTGAG CTCGCTGAGCAGGCAAAGAGGCGTGCCGAAGTAGCAAGGCTAAGAGAGATTCACACATTGAAGGGCCATGTTGAGTCAGTGGTTAAAATGAAGGGGCTTG ATATTGAGACCATCCAACAACACTACACAGTCTAA
AA sequence Show only first row Show all	>Potri.006G005900.1 pacid=42769023 polypeptide=Potri.006G005900.1.p locus=Potri.006G005900 ID=Potri.006G005900.1.v4.1 annot-version=v4.1 MEDIKNESIDLEKIPIEEVFEKLKCTKEGLRTTEGEERLRIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIVLANGGGKPPDWQDFVGIIVLL IINSTISFIEENNAGNAAASLMAGLAPKTKVLRDGKWSEQDAAILVPGDIISIKLGDIIPADARLMVGDPLKIDQSALTGESLPVTKYPGSGVYSGSTCK QGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAIGMLIEIIVMYPIQHRRYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR LSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIEVFVKDMDKDTLILHAARASRTENQDAIDASIVGMLGDPSEARSGIIEVHFLPFNPV EKRTAITYFDGNGDWYRSSKGAPEQIIELCELKGNIRKKAHEIINNFADRGLRSLGVARHRIPEKNKESAGAPWEFVGLLPLFDPPRHDSAETIRRALDL GVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGDNKDESIASVPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGI AVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDS WKLKEIFAMGVVLGTYLAIITVLFFWLAHGTDFFSDKFGVRSIRGKPDELTAALYLQVSIISQALIFVTRSRSWSFTERPGLLLVGAFLAAQLVATVIAV YANWGFARIQGIGWGWAGIIWIFSIITYIPLDILKFITRYALTGKAWDNLLENKTAFTTKKDYGKGEREAQWATAQRTLHGLQSPETMKNDKASYRELSE LAEQAKRRAEVARLREIHTLKGHVESVVKMKGLDIETIQQHYTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G005900 [exp]	0	1	Pt-AHA6.2
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Potri.014G073700 [exp]	1.41	0.7662
AT5G41761			unknown protein		Potri.012G031900 [exp]	3.00	0.7449
AT4G34770			SAUR-like auxin-responsive pro...		Potri.004G165800 [exp]	5.00	0.7410
AT2G31500		CPK24	calcium-dependent protein kina...		Potri.007G127000 [exp]	5.29	0.7412
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Potri.008G113200 [exp]	6.00	0.7262
AT1G07710			Ankyrin repeat family protein ...		Potri.005G069400 [exp]	6.48	0.7623
AT1G04360			RING/U-box superfamily protein...		Potri.008G165900 [exp]	13.41	0.7374
AT4G08850			Leucine-rich repeat receptor-l...		Potri.003G108200 [exp]	15.19	0.7357
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003600 [exp]	16.43	0.7138
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	16.97	0.7341

Compare expression of checked genes

Potri.006G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.