Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15110 877 / 0 CYP97B3 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) AT1G31800 426 / 7e-143 CYP97A3, LUT5 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) AT3G53130 422 / 7e-142 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) AT3G14680 147 / 4e-38 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT5G52400 146 / 1e-37 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT3G14640 145 / 2e-37 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT2G26710 143 / 9e-37 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT1G57750 142 / 1e-36 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT3G14630 142 / 2e-36 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT2G44890 140 / 1e-35 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G088100 [exp] 426 / 2e-142 AT1G31800 921 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Potri.006G119800 [exp] 412 / 2e-138 AT3G53130 834 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Potri.011G117600 [exp] 156 / 2e-41 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.018G070900 [exp] 154 / 3e-40 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.015G145100 [exp] 150 / 6e-39 AT5G52400 646 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.006G154500 [exp] 144 / 5e-37 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.012G142000 [exp] 143 / 1e-36 AT5G52400 622 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.011G117700 [exp] 139 / 1e-36 AT3G14620 368 / 9e-125 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.004G100400 [exp] 142 / 2e-36 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039040 [exp] 898 / 0 AT4G15110 880 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Lus10020380 [exp] 427 / 1e-142 AT1G31800 905 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Lus10023891 [exp] 416 / 5e-139 AT3G53130 852 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10014399 [exp] 410 / 1e-136 AT3G53130 850 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10035235 [exp] 145 / 5e-37 AT4G39490 359 / 2e-118 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10009232 [exp] 146 / 1e-36 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10033044 [exp] 140 / 2e-35 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10037999 [exp] 140 / 4e-35 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10008423 [exp] 139 / 4e-35 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10035234 [exp] 137 / 2e-34 AT4G39490 382 / 1e-127 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.006G006200.1 pacid=42768669 polypeptide=Potri.006G006200.1.p locus=Potri.006G006200 ID=Potri.006G006200.1.v4.1 annot-version=v4.1 ATGTCTTTAACAGCAACTTCCACTTCTCCCTTACAGCTCCCCTTCACTACCAGCAATGGCAATTACTTGCAAAGAAATGATTTTGGAGCTGTGGGCATCT CAAGATTTCTCAGCTCCAAGACTAAAGGGTCTCCTCTTATCAGATGCCAGTCGACCAGCACTGAAGAGCCGAAAACCAGGAACCCTTTGGACAAAGCTAG CAACCTGCTTACCAATTTGTTAAGTGGGGGAAATCTAGGGTCAATGCCTATAGCTGAAGGTGCAGTATCTGATTTGTTCAGTCGTCCCCTCTTCTTCTCA CTGTTTGATTGGTTCATAGAGCATGGATCTGTGTATAAACTTGCCTTTGGGCCAAAAGCATTTGTTGTTGTATCAGACCCCATTGTAGCAAGACATATTC TTCGAGAAAACGCATTCTCTTATGACAAGGGAATTCTCGCCGATATCCTAGAACCAATAATGGGAAAAGGACTTATACCTGCTGACTTTGACACATGGAA GCTAAGGAGAAAAGTAATTGCTCCTGGGTTTCATGCCTTGTACTTGGAAGCTATGGTCAAGGTATTCACTCAATGTTCAGAAAGATCAGTATTGAAAATT GACGAACTTCTTGAAGGAGAGGACTTGCATGGCAAGAAGACAGTTGAGTTGGATCTTGAAGCAGAGTTTTCAAGTTTAGCTCTTGATATTATTGGCCTTG GTGTCTTCAACTATGACTTTGGTTCAGTTACAAAGGAATCACCCGTGATTAAGGCAGTGTATGGTGCTCTTTTTGAAGCTGAGCATAGATCCACTTTCTA CGTTCCTTACTGGAAATTTCCTCTAGCAAGGTGGTTAGTCCCCAGACAAAGGAAGTTTCAGAAAGATCTCAAAGTTATCAATGAGTGCCTTGATGGACTC ATACGAAATGCGAAAGAGACCAGACAGGAAACAGATGTTGAGAAACTGCAGCAAAGGGACTACTCAAATCTGAAGGATGCAAGTCTTCTACGATTTCTAG TTGATATGCGGGGAGCTGATGTTGATGACCGTCAGCTAAGAGATGACTTGATGACAATGCTCATCGCGGGGCATGAAACAACAGCTGCAGTGCTTACTTG GGCTGTTTTCCTTCTTGCACAGAATCCCTCCAAAATGAAGAAAGCTCAAGCAGAGATTGATCAAGTGCTGGGTCAGGGGAGGCTGACTTTCGAGTTGATT AAACAGTTGAAGTACATTCGACTTATTGTGGTGGAGTCTCTTCGTTTGTATCCTCAGCCACCATTGCTGATTAGACGCTCCCTCAAACCAGATGTTTTGC CAGGAGGATACAAAGGAGACAAAGACGGTTATGCAATTCCTGCTGGGACTGATATCTTTGTATCGGTCTATAATCTCCATAGATCTCCATATTTTTGGGA CAATCCTAACGAATTTGAACCAGAAAGGTTCTTAGTGACAAGAAATAATGATGGGATTGAAGGATGGAGCGGCTTCGATCCATCTCGAAGCCCAGGAGCT CTATATCCAAATGAGATTATATCAGATTTTGCCTTCTTACCCTTTGGAGGAGGCCCAAGAAAATGCGTTGGGGATCAATTTGCGCTCATGGAATCAACCA TAGCTTTGACTTTATTGTTACAGAAATTCGACGTAGAGCTAAGAGGTTCCCCAGAGGAGGTAGAATTAGTAACAGGTGCAACAATCCATACCAAGAATGG ACTGTGGTGTAGATTGAAGAAAAGATCTGATGTCCATTAA
AA sequence Show only first row Show all	>Potri.006G006200.1 pacid=42768669 polypeptide=Potri.006G006200.1.p locus=Potri.006G006200 ID=Potri.006G006200.1.v4.1 annot-version=v4.1 MSLTATSTSPLQLPFTTSNGNYLQRNDFGAVGISRFLSSKTKGSPLIRCQSTSTEEPKTRNPLDKASNLLTNLLSGGNLGSMPIAEGAVSDLFSRPLFFS LFDWFIEHGSVYKLAFGPKAFVVVSDPIVARHILRENAFSYDKGILADILEPIMGKGLIPADFDTWKLRRKVIAPGFHALYLEAMVKVFTQCSERSVLKI DELLEGEDLHGKKTVELDLEAEFSSLALDIIGLGVFNYDFGSVTKESPVIKAVYGALFEAEHRSTFYVPYWKFPLARWLVPRQRKFQKDLKVINECLDGL IRNAKETRQETDVEKLQQRDYSNLKDASLLRFLVDMRGADVDDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQNPSKMKKAQAEIDQVLGQGRLTFELI KQLKYIRLIVVESLRLYPQPPLLIRRSLKPDVLPGGYKGDKDGYAIPAGTDIFVSVYNLHRSPYFWDNPNEFEPERFLVTRNNDGIEGWSGFDPSRSPGA LYPNEIISDFAFLPFGGGPRKCVGDQFALMESTIALTLLLQKFDVELRGSPEEVELVTGATIHTKNGLWCRLKKRSDVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Potri.006G006200 [exp]	0	1
AT5G53490			Tetratricopeptide repeat (TPR)...		Potri.012G018100 [exp]	2.00	0.8760
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	4.79	0.8980
AT5G15140			Galactose mutarotase-like supe...		Potri.017G080000 [exp]	9.05	0.8839
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Potri.002G234400 [exp]	10.95	0.8799
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	18.97	0.8522
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.010G076700 [exp]	19.97	0.8362
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	20.61	0.8748	Pt-ANL2.1
AT4G21770			Pseudouridine synthase family ...		Potri.004G019100 [exp]	21.54	0.8649
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G036600 [exp]	22.13	0.8507
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.006G267700 [exp]	28.14	0.8361	Pt-COL1.1

Compare expression of checked genes

Potri.006G006200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.