Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39720 48 / 2e-06 VQ motif-containing protein (.1) AT1G35830 44 / 3e-05 VQ motif-containing protein (.1) AT5G65170 44 / 5e-05 VQ motif-containing protein (.1) AT3G22160 41 / 0.0003 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017900 [exp] 233 / 7e-77 AT4G15120 / VQ motif-containing protein (.1) Potri.001G158800 [exp] 66 / 6e-13 AT4G39720 58 / 6e-10 VQ motif-containing protein (.1) Potri.003G075800 [exp] 65 / 2e-12 AT3G22160 54 / 8e-09 VQ motif-containing protein (.1) Potri.007G091600 [exp] 47 / 9e-06 AT5G65170 72 / 2e-13 VQ motif-containing protein (.1) Potri.005G076600 [exp] 45 / 2e-05 AT5G65170 70 / 7e-13 VQ motif-containing protein (.1) Potri.005G166100 [exp] 42 / 0.0004 AT5G65170 94 / 8e-21 VQ motif-containing protein (.1) Potri.002G094900 [exp] 41 / 0.0004 AT1G35830 89 / 1e-19 VQ motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024738 [exp] 42 / 0.0004 AT1G35830 92 / 3e-21 VQ motif-containing protein (.1) Lus10006941 [exp] 41 / 0.0005 AT1G35830 93 / 3e-21 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.006G006300.1 pacid=42768041 polypeptide=Potri.006G006300.1.p locus=Potri.006G006300 ID=Potri.006G006300.1.v4.1 annot-version=v4.1 ATGAGCGGAATCATGTCCGATAATCCTACCGATTGGTCCCAATTCTACCAACAAAACCTTTCTAACCAAGTCTTACCCCCTATTCGACCCATGTTCCGGG ATCGAGTCGCCGATTCCACTACTGTCACCACCACCACCATCAATACGTCTGGTGTCCCGAACCCCATGGGTTCGAGCAATTCCAGCTCAAGTGCTGGACG TCAATTGAGTCCCGAAGGTCGTGTCGCCAAGCCTATTCGTAAGAGGTCTAGGGCTTCAAGAAGAACCCCTACAACATTACTCAATACAGACACCACAAAT TTCCGAGCCATGGTGCAACAATTCACTGGTGGTCCTAGTGCACCATTTGCATCAGGGTCACAAATTAATGCAACAAATTTTGGTTTTGCATTAGGTGCTT ATCGTCAAGCTCATCATGTTAATCAACCTAGTCCAGTCATGATGCCACCTGCAGGGTATAATTTGCAATATCAGCAGCAGCAGCAGCAGCAATTCCAGCA GCAAAGCCAGCATCCATCATCATACATGTTTTCATTGGGCAACAGTAATATCGGTACTAGCACTACCACCACCACCACCACCCCTGGTGATATGTTTTTC CAGAGACTTGGAAACCCTAGAGTACCTACTACAAGCATGGAAGTTTCTGATCAAGGGTTTGGTTCAACAGAAGGAGCTGTCATTTCTTCCCTGGTGGCTC CTCCTTCTAGGCCTCCATCTTCCAGCTCCAATGAGAATAGAAGCAATACTTTCTTATTCTGA
AA sequence Show only first row Show all	>Potri.006G006300.1 pacid=42768041 polypeptide=Potri.006G006300.1.p locus=Potri.006G006300 ID=Potri.006G006300.1.v4.1 annot-version=v4.1 MSGIMSDNPTDWSQFYQQNLSNQVLPPIRPMFRDRVADSTTVTTTTINTSGVPNPMGSSNSSSSAGRQLSPEGRVAKPIRKRSRASRRTPTTLLNTDTTN FRAMVQQFTGGPSAPFASGSQINATNFGFALGAYRQAHHVNQPSPVMMPPAGYNLQYQQQQQQQFQQQSQHPSSYMFSLGNSNIGTSTTTTTTTPGDMFF QRLGNPRVPTTSMEVSDQGFGSTEGAVISSLVAPPSRPPSSSSNENRSNTFLF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39720			VQ motif-containing protein (....		Potri.006G006300 [exp]	0	1
AT4G32060			calcium-binding EF hand family...		Potri.018G118089 [exp]	7.07	0.9352
AT3G04350			Plant protein of unknown funct...		Potri.002G256802 [exp]	10.19	0.9479
AT5G15720		GLIP7	GDSL-motif lipase 7 (.1)		Potri.017G102100 [exp]	11.74	0.9606
					Potri.003G184601 [exp]	16.97	0.9530
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.011G032300 [exp]	19.20	0.9446
AT2G26530		AR781	Protein of unknown function (D...		Potri.002G128500 [exp]	20.00	0.9527
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.011G112400 [exp]	20.78	0.9236
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.001G083700 [exp]	23.87	0.9056	ATHB.3
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Potri.012G078900 [exp]	26.21	0.8028
AT2G45360			Protein of unknown function (D...		Potri.001G117600 [exp]	28.63	0.8593

Compare expression of checked genes

Potri.006G006300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.