Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46680 446 / 3e-154 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62910 209 / 1e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 201 / 5e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 199 / 4e-57 RPF2 rna processing factor 2 (.1) AT1G09900 196 / 2e-56 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62930 196 / 4e-56 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 194 / 2e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 193 / 2e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 196 / 3e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT3G53700 195 / 4e-55 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074500 [exp] 208 / 9e-61 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 202 / 2e-58 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 198 / 8e-57 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074700 [exp] 194 / 5e-56 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 196 / 1e-55 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 195 / 4e-55 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 194 / 4e-55 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 194 / 1e-54 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 192 / 1e-54 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039036 [exp] 466 / 2e-162 AT5G46680 399 / 1e-135 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10025564 [exp] 307 / 1e-100 AT5G46680 276 / 2e-88 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027024 [exp] 194 / 2e-59 AT5G46680 153 / 5e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027914 [exp] 196 / 5e-55 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 195 / 4e-54 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 191 / 7e-54 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 192 / 8e-54 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 191 / 3e-53 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 190 / 5e-53 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 189 / 1e-52 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G006500.1 pacid=42769433 polypeptide=Potri.006G006500.1.p locus=Potri.006G006500 ID=Potri.006G006500.1.v4.1 annot-version=v4.1 ATGGTCAGTAGATCATCGACTAGATTCTTGAATATTTGTATAGCTTCTTTTTGCAAAGCCAAGCATTTACAAAGAGCTGAAACTGTGATTATTGATGGTG TAAGACTAGGTGTTTTGCCTGATGTTGTTACTTACAATACATTGATCAATGCTTACTCTCGTTTTGTTAGTTTTGATGCTGCTTATTCAGTACTTGATAG AATGAAAGAAGCCAGTATAAAACCTGATATAGTTACTTACAATTCTTTGATTGCTGGTGCCATGAGGCATTGTTTGTTGTCGAATTGTATGGATTTGTTT GAAGAAATGCTTGAGTTGGGGATAAAACCTGATATTTGGAGTTATAATACTTTGATGCATTGTTTTTTTAAGCTAGAAAGACCTGATGACGCATATCGGG TATTTACGGATATTATACTTTGTTATTTATCACCTTCTCAAGCTACGTATAATACTATGCTTAATGGGCTTTGCAAGTGTGGTTTTGTGGAGAATGCGCT CATGTTGTTTAGGAAATTAAAGAGACATGGGTTTGTTCCTTCATTGGTTACTTATAATATTCTTATTAATGGGTTGTGTAAAGCTTGGAAATTGAAGACA GCTAGGTGGATGCTCAAGGAGCTTGGTGCATCTGGACTTGTTCCAAATGTTATAACGTATACTACAGTCATGAGGTGTTGCTTTAGATCTAGGAGGTTTG AACAAGGGCTTGAGATATTTGAAGAGATGATTGATAAGGGATATACCTTTGACGGTTTTGCATATTGCACAGTTGTTGGTGCTTTGGTCAAGACTTGTAG GATTGAAGAAGCAAGTCATTATATGGAGCGGATGGTGAACACTGACATTGGTCTTGATATGGCATCTTATAATACACTCATTAATTTGTATTGTAAAGGT GGTAAGTTGGAAATGGCACATGGAGTACTTGATAAAATGGAAAAGGAAGGTTTTGAACGTGATGAGTATACAAACACGATTCTGATGAATGGGTTGTGTG AGGAAGGTGATGTTGAGGGGGCCATGGAGTATATGAATGTAGCGGGTTTCAATTCAAACTTGGTTGCTTTAAACACCATGGTTGATAGGTGGTGTAAAGC TGATCAGATTGATTATGCTTTTAAAATCTTTGATTCAATGGATATGAGGGATTCTTTTACCTACTCCTCCTTGATTCACAATCTTTGCAAGGTTGGAAGG TTCCGTTGTGCATCCAAGCTCTTGCTCTCTTGTGTAAGAAGTCGCACGAGAATACTCCCATCTGCTAAGCGTGCAGTTTTTGATTGTCTTCGTCATTCTG GTCATCAAAGAGAAGCAAAGAGACTTAAATCAGAAATTAAATTGGCTCTTTCCGCAGTTGTTTAG
AA sequence Show only first row Show all	>Potri.006G006500.1 pacid=42769433 polypeptide=Potri.006G006500.1.p locus=Potri.006G006500 ID=Potri.006G006500.1.v4.1 annot-version=v4.1 MVSRSSTRFLNICIASFCKAKHLQRAETVIIDGVRLGVLPDVVTYNTLINAYSRFVSFDAAYSVLDRMKEASIKPDIVTYNSLIAGAMRHCLLSNCMDLF EEMLELGIKPDIWSYNTLMHCFFKLERPDDAYRVFTDIILCYLSPSQATYNTMLNGLCKCGFVENALMLFRKLKRHGFVPSLVTYNILINGLCKAWKLKT ARWMLKELGASGLVPNVITYTTVMRCCFRSRRFEQGLEIFEEMIDKGYTFDGFAYCTVVGALVKTCRIEEASHYMERMVNTDIGLDMASYNTLINLYCKG GKLEMAHGVLDKMEKEGFERDEYTNTILMNGLCEEGDVEGAMEYMNVAGFNSNLVALNTMVDRWCKADQIDYAFKIFDSMDMRDSFTYSSLIHNLCKVGR FRCASKLLLSCVRSRTRILPSAKRAVFDCLRHSGHQREAKRLKSEIKLALSAVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46680			Pentatricopeptide repeat (PPR-...		Potri.006G006500 [exp]	0	1
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Potri.002G241366 [exp]	6.00	0.8466
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	7.07	0.8542
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	7.74	0.8553
AT2G03670		CDC48B	cell division cycle 48B (.1)		Potri.001G128700 [exp]	10.48	0.8090	Pt-CDC48.1
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	11.40	0.8218
AT2G21630			Sec23/Sec24 protein transport ...		Potri.002G238500 [exp]	15.49	0.7985
					Potri.003G046300 [exp]	16.37	0.7731
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.002G137100 [exp]	25.80	0.8117
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	26.05	0.8351
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.017G111800 [exp]	26.98	0.7613

Compare expression of checked genes

Potri.006G006500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.