Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32260 444 / 1e-157 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 418 / 4e-148 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1) AT2G38670 100 / 1e-23 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017500 [exp] 518 / 0 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.001G159400 [exp] 428 / 4e-152 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 428 / 4e-152 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.006G071000 [exp] 107 / 3e-26 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.018G132700 [exp] 107 / 4e-26 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 101 / 5e-24 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 100 / 1e-23 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003808 [exp] 462 / 6e-165 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10010471 [exp] 461 / 2e-164 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10027337 [exp] 426 / 2e-150 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10036229 [exp] 389 / 1e-136 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 385 / 2e-135 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10000195 [exp] 242 / 5e-80 AT4G15130 244 / 5e-81 phosphorylcholine cytidylyltransferase2 (.1) Lus10039039 [exp] 240 / 1e-78 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1) Lus10022942 [exp] 107 / 5e-26 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10027604 [exp] 107 / 5e-26 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 102 / 2e-24 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01467 [poplar] [flax] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Potri.006G006700.1 pacid=42770164 polypeptide=Potri.006G006700.1.p locus=Potri.006G006700 ID=Potri.006G006700.1.v4.1 annot-version=v4.1 ATGGCGGAGACACAACAGAAAGAGAAGATGGTGAATGGAAATAGCTGCGAAGTATCTTGTCATTCGAATCCTGATCCTTCAACACCACCACCGTCTGATC GTCCTGTTCGTGTTTATGCTGATGGGATCTATGATCTCTTCCACTTTGGCCACGCTCGCTCCCTTGAACAAGCTAAAAAAGCGTTTCCGAACACCTACTT GCTTGTCGGATGTTGCAATGATGAAATCACACACAAATACAAGGGAAAAACTGTCATGACAGAGGAAGAGCGTTATGAATCTCTTCGCCATTGCAAGTGG GTGGATGAAGTCATTCCTGGTGCGCCTTGGGTGATTGATCAAGAATTTCTTGACAAGCACAATATTGACTACGTCGCTCATGATTCTCTACCCTATGCTG ATGCCAGTGGAGCAGGAAAGGATGTCTATGAATTTGTAAAAAAAGTTGGAAGGTTCAAAGAAACAAGAAGAACTGATGGCATTTCTACGTCGGACATTAT AATGAGGATTGTCAAAGACTATAACCAGTATGTCTTACGTAATTTGGATCGAGGATATTCGAGAAAAGAGCTTGGTGTTAGCTACGTAAAGGAAAAGCGA CTGAGGGTGAACATGAGGTTGAAGAAACTACAAGAGAAAGTGAAGGAACATCAAGAAAAAGTTGGAGAAAAGTTTCAAATTGTTGCAATGCATCGTAATG AATGGGTGGAAAATGCTGATCGTTGGGTTGCTGGATTCCTTGAGATGTTTGAAGAAGGTTGCCATAAAATGGGCACAGCCATCAGGGATCGAATTCAAGA GCGATTGAGAGGGCAGCTGTCAAATGGGCTGCTGGAAAATGGTAAGGCAAACAGTGAAGACGATGATGAAGAGTATTATTATGATGATGATGATTATGAT GACGATGACGATGAAGAATATTATACCGAGACATATGACAAAGATGCGAAAAGTAAGAAGTAG
AA sequence Show only first row Show all	>Potri.006G006700.1 pacid=42770164 polypeptide=Potri.006G006700.1.p locus=Potri.006G006700 ID=Potri.006G006700.1.v4.1 annot-version=v4.1 MAETQQKEKMVNGNSCEVSCHSNPDPSTPPPSDRPVRVYADGIYDLFHFGHARSLEQAKKAFPNTYLLVGCCNDEITHKYKGKTVMTEEERYESLRHCKW VDEVIPGAPWVIDQEFLDKHNIDYVAHDSLPYADASGAGKDVYEFVKKVGRFKETRRTDGISTSDIIMRIVKDYNQYVLRNLDRGYSRKELGVSYVKEKR LRVNMRLKKLQEKVKEHQEKVGEKFQIVAMHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLRGQLSNGLLENGKANSEDDDEEYYYDDDDYD DDDDEEYYTETYDKDAKSKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.006G006700 [exp]	0	1
AT5G49610			F-box family protein (.1)		Potri.007G027300 [exp]	4.89	0.6320
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G155600 [exp]	8.36	0.6046
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.014G164800 [exp]	10.95	0.5761
AT3G30390			Transmembrane amino acid trans...		Potri.004G111400 [exp]	11.22	0.6032
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Potri.017G026500 [exp]	11.35	0.6290	GLX2.3
					Potri.015G054350 [exp]	25.69	0.6273
AT4G08790			Nitrilase/cyanide hydratase an...		Potri.008G047100 [exp]	29.93	0.5441
AT4G25390			Protein kinase superfamily pro...		Potri.012G131900 [exp]	37.30	0.5473
AT2G26850			F-box family protein (.1)		Potri.006G040000 [exp]	42.52	0.5943
AT3G26935			DHHC-type zinc finger family p...		Potri.012G103300 [exp]	49.59	0.5593

Compare expression of checked genes

Potri.006G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.