Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ZIP4.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05300 323 / 4e-109 ZIP5 zinc transporter 5 precursor (.1.2) AT3G12750 315 / 7e-106 ZIP1 zinc transporter 1 precursor (.1) AT2G32270 310 / 2e-104 ZIP3 zinc transporter 3 precursor (.1) AT1G31260 284 / 1e-93 ZIP10 zinc transporter 10 precursor (.1) AT4G19690 277 / 3e-91 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT5G62160 275 / 3e-90 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1) AT2G04032 270 / 3e-88 ZIP7 zinc transporter 7 precursor (.1) AT4G19680 253 / 1e-81 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT2G30080 196 / 1e-59 ATZIP6, ZIP6 ZIP metal ion transporter family (.1) AT5G45105 189 / 9e-58 ZIP8 zinc transporter 8 precursor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006600 [exp] 537 / 0 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.010G173300 [exp] 400 / 2e-139 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 381 / 8e-132 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.001G160400 [exp] 355 / 9e-122 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.010G134300 [exp] 314 / 1e-105 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.015G117900 [exp] 310 / 6e-104 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.015G117700 [exp] 308 / 1e-103 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.006G006900 [exp] 281 / 4e-95 AT1G05300 187 / 2e-58 zinc transporter 5 precursor (.1.2) Potri.010G135400 [exp] 272 / 2e-89 AT2G04032 325 / 4e-110 zinc transporter 7 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041613 [exp] 410 / 3e-143 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10024107 [exp] 409 / 4e-143 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10041647 [exp] 407 / 6e-142 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10040615 [exp] 290 / 4e-96 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10006935 [exp] 285 / 2e-94 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10014062 [exp] 283 / 1e-93 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10019854 [exp] 246 / 2e-80 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10014063 [exp] 232 / 8e-74 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10031307 [exp] 140 / 2e-40 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10031099 [exp] 106 / 1e-27 AT1G05300 114 / 2e-31 zinc transporter 5 precursor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF02535 [poplar] [flax] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Potri.006G006800.1 pacid=42768015 polypeptide=Potri.006G006800.1.p locus=Potri.006G006800 ID=Potri.006G006800.1.v4.1 annot-version=v4.1 ATGCAGAATTTTATCAAATTTTATTTAACCTTCATTTGCTTGCTTCTACTACTCCCTACTCTTGCTTTAGCAGAATGCACATGTGATGCAGGAGGAGGAG ATGGCAAAAATAAATCTGAGGCCTTGAAATACAAAGCCGTAGCAATTGCTTCTATCCTTTTTGCGGGTGCAGTTGGAGTTTGTCTTCCAATTCTTGGAAA AACTATCCCCGTTTTAAGCCCTGAAAGGAATATTTTCTTCATCATCAAAGCTTTTGCAGCCGGTGTTATATTGTCGACAGGCTTTATTCATGTGCTTCCT GATGCTTTTGATAGCTTGACATCGCCATGCCTTGGTGAAAATCCTTGGGGTAAATTTCCCTTCACGGGGTTTGTGGCAATGGTGTCGGCAATCGGGACTT TAATGGTGGATTGTCTTGCAAGTTCTTATTATACTAGGTTGCACCTCAGCAAGGCTCAACCAGAGGAGAGTAGGGATGAGGAGAAGGCAGCAGTAGAGGC TCATGAGGGTCATGTTCATACTCATGCTACTCATGGCCATTCTCATGGCTTAGTGGATAGTTCTGGTTCTGGTCCATCTCAGCTTATTCGCCATCGGGTT ATTACACAGGTTTTGGAGTTGGGAATTGTGGTGCACTCTGTGATTATAGGAGTTTCTTTAGGAGCTTCTGGAAGTCCCAAGACAATAAGACCTCTAGTGG CTGCCCTAAGCTTTCACCAATTTTTTGAGGGTATGGGACTTGGTGGATGCATTACTCAGGCGAAATTCAAGACCAAAACTATTGTGATAATGGCACTCTT CTTCTCTCTAACAACCCCAGTTGGCATTGCAATTGGCATAGGCATATCAAATGTCTATAATGAGAGCAGTCCTAATGCTCTTATTGTTGAAGGAATTTTC AATGCTGCATCAGCTGGTATCCTAATCTACATGGCACTCGTGGATCTTCTGGCAGCTGATTTTATGCATCCAAAAGTGCAAAGTAATGGAGCACTTCAAT TTGGGGTTAATGTTTCTCTTCTTCTAGGAGCTGGTTGTATGTCTCTCGTTGCCAAATGGGCTTGA
AA sequence Show only first row Show all	>Potri.006G006800.1 pacid=42768015 polypeptide=Potri.006G006800.1.p locus=Potri.006G006800 ID=Potri.006G006800.1.v4.1 annot-version=v4.1 MQNFIKFYLTFICLLLLLPTLALAECTCDAGGGDGKNKSEALKYKAVAIASILFAGAVGVCLPILGKTIPVLSPERNIFFIIKAFAAGVILSTGFIHVLP DAFDSLTSPCLGENPWGKFPFTGFVAMVSAIGTLMVDCLASSYYTRLHLSKAQPEESRDEEKAAVEAHEGHVHTHATHGHSHGLVDSSGSGPSQLIRHRV ITQVLELGIVVHSVIIGVSLGASGSPKTIRPLVAALSFHQFFEGMGLGGCITQAKFKTKTIVIMALFFSLTTPVGIAIGIGISNVYNESSPNALIVEGIF NAASAGILIYMALVDLLAADFMHPKVQSNGALQFGVNVSLLLGAGCMSLVAKWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Potri.006G006800 [exp]	0	1	Pt-ZIP4.4
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Potri.006G006900 [exp]	1.41	0.9910	Pt-ZIP4.1
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Potri.006G006600 [exp]	2.44	0.9862
AT5G26010			Protein phosphatase 2C family ...		Potri.018G059800 [exp]	3.46	0.9664
AT1G14160			Uncharacterised protein family...		Potri.008G088700 [exp]	5.91	0.9655
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.006G037000 [exp]	9.94	0.9276	PIN8,Pt-PIN2.2
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.010G153700 [exp]	15.09	0.9117
AT1G76070			unknown protein		Potri.005G107500 [exp]	19.79	0.9519
AT1G04610		YUC3	YUCCA 3 (.1)		Potri.008G174600 [exp]	20.85	0.8865	FML6
					Potri.013G070350 [exp]	21.21	0.9487
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006200 [exp]	23.62	0.9496

Compare expression of checked genes

Potri.006G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.