Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21790 439 / 8e-151 UDP-Glycosyltransferase superfamily protein (.1) AT3G21750 437 / 3e-150 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21780 433 / 1e-148 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21760 419 / 4e-143 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21800 407 / 1e-138 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT4G15280 400 / 8e-136 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT4G15260 357 / 2e-120 UDP-Glycosyltransferase superfamily protein (.1) AT2G29710 353 / 9e-118 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 350 / 5e-116 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT1G07260 347 / 4e-115 UGT71C3 UDP-glucosyl transferase 71C3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017232 [exp] 662 / 0 AT3G21760 500 / 7e-175 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017300 [exp] 653 / 0 AT3G21780 477 / 5e-166 UDP-glucosyl transferase 71B6 (.1) Potri.016G017100 [exp] 652 / 0 AT3G21750 471 / 1e-163 UDP-glucosyl transferase 71B1 (.1) Potri.016G017400 [exp] 651 / 0 AT3G21790 474 / 9e-165 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016500 [exp] 649 / 0 AT3G21790 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007600 [exp] 538 / 0 AT3G21760 448 / 3e-154 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016000 [exp] 536 / 0 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.016G016700 [exp] 521 / 0 AT3G21750 409 / 3e-139 UDP-glucosyl transferase 71B1 (.1) Potri.006G007300 [exp] 520 / 0 AT3G21790 427 / 4e-146 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036087 [exp] 450 / 2e-155 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026795 [exp] 449 / 4e-155 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036086 [exp] 421 / 7e-144 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 411 / 1e-139 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036088 [exp] 399 / 6e-135 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039037 [exp] 338 / 2e-111 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 304 / 5e-98 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 303 / 2e-97 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 260 / 4e-81 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039302 [exp] 231 / 3e-70 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.006G007200.1 pacid=42769961 polypeptide=Potri.006G007200.1.p locus=Potri.006G007200 ID=Potri.006G007200.1.v4.1 annot-version=v4.1 ATGAAGAACGCTGAGCTAGTCTTCATTCCAGCACCAATTATAGGTCACTTTGTATCCGCAGTAGAGGTAGCCAAGCTCCTTTTAGAACGTGATGAGAGGC TTTCAATCACCTTCCTCGTCATGAAATCAAGTTTAAGCACCAAGATTGCTCGTAGCTACAATGATTCAGTGATTGCAGCCTGCGGTCGTATCCGGTTCAT TCACTTGCCTGAAGTTGAGCTTGATCCAAACCTACCCAGCAGGTTTTTCATTTCTTTGATTGAAGCCCAAAAACCTCATGTCAAAGAAGAAGTCTCTAAG CTTGTGATTGAGTCCGAGTCAAGCCCTGACTCGCCTCGAATTGCTGGGTTTGTTCTTGATATGTTTTCTACATCAATCATAGATGTGGCCAATGAATTTG GTGTTCCCTCTTATATTTTCTTTACATCTGCAGCAGCTTTTCTTGGTACTACGTTCTATATTCAGGCTCTCCATGATGAGCAGAAAGTTGACCCTACCGA GTTCAAGAACTCGGATGTTGAATTGGCCATGCCGTGTTTGGCGAGTCCCTTTCCAGCAAAGGTTTTACCATCTTCGGTACTTGGCAAAGATTTCCTGCCT CTTTTTCTTCGCCTGTTTAGAAGGTTGAGAGAAGCCAAGGGAATTATGGTAAATACATTTTACGAGTTGGAATCTCATGCGATCAACTCATTCTCTGATG GTAATTATCCTCCTGTTTATCCAGTTGGTCCCCTTTTGAACCTCAATGGCCATGAGCATGATGTGGTGTCAGATATTAGAAAAGATATTCACAGGGATAT CATGCAATGGCTTGACCATCAGCCTTCATCTTCTGTAGTCTACCTGTGTTTTGGGAGTATGGGAAGTTTCGGTGTGGAGCAAGTGAAAGAGATCGCATGT GGATTGGAGCAAAGTGGACACCGATTCTTATGGTCTCTACGTCAACCTCCACCAAATGGCAAGATGGAAGCTCCGAGTGATTATGTGAATCCTGCAGAAG TCTTGCCTGAAGGGTTCTTAGATCGAACATCCGAGATCGGAAAAATAATAGGATGGGCCCCACAGGTAGATATCTTGGCTCACCCATCTATAGGAGGATT TGTATCGCATTGTGGGTGGAATTCTACACTGGAAAGCATATGGTTTGATGTTCCAATTGCTACATGGCCAATGCATGCTGAGCAGCAATTTAATGCTTTC CTAATGATTGTTGAATTCGGCTTAGCAATAGAAATTCAAATGAATTATAGAAAAGAATTTAATATGGATGCTTGTGAAATTGTTAGTGCCGAGGAAATAG AGAAAGGAATAAGGTGTTTAATGGAGATTGATATTAAGAAAAAGGAGAAGTTGAAGGAAATAAGCGAAAAGAGTAGGAAAGCTTTGATGAAAGATGGATC CTCATACACTTGGTTAGATCGTGTGGTTCAAGATATGATAGACAACATGCCATAA
AA sequence Show only first row Show all	>Potri.006G007200.1 pacid=42769961 polypeptide=Potri.006G007200.1.p locus=Potri.006G007200 ID=Potri.006G007200.1.v4.1 annot-version=v4.1 MKNAELVFIPAPIIGHFVSAVEVAKLLLERDERLSITFLVMKSSLSTKIARSYNDSVIAACGRIRFIHLPEVELDPNLPSRFFISLIEAQKPHVKEEVSK LVIESESSPDSPRIAGFVLDMFSTSIIDVANEFGVPSYIFFTSAAAFLGTTFYIQALHDEQKVDPTEFKNSDVELAMPCLASPFPAKVLPSSVLGKDFLP LFLRLFRRLREAKGIMVNTFYELESHAINSFSDGNYPPVYPVGPLLNLNGHEHDVVSDIRKDIHRDIMQWLDHQPSSSVVYLCFGSMGSFGVEQVKEIAC GLEQSGHRFLWSLRQPPPNGKMEAPSDYVNPAEVLPEGFLDRTSEIGKIIGWAPQVDILAHPSIGGFVSHCGWNSTLESIWFDVPIATWPMHAEQQFNAF LMIVEFGLAIEIQMNYRKEFNMDACEIVSAEEIEKGIRCLMEIDIKKKEKLKEISEKSRKALMKDGSSYTWLDRVVQDMIDNMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007200 [exp]	0	1
AT5G61820			unknown protein		Potri.015G108500 [exp]	1.41	0.9436
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016500 [exp]	4.00	0.9063
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G391100 [exp]	8.00	0.8508
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027300 [exp]	8.12	0.8780
AT1G47670			Transmembrane amino acid trans...		Potri.009G140800 [exp]	8.30	0.9097
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G017100 [exp]	8.83	0.9215
AT1G66920			Protein kinase superfamily pro...		Potri.017G116955 [exp]	15.87	0.9050
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.008G170100 [exp]	16.43	0.8818
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G075000 [exp]	18.13	0.9004
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.015G064100 [exp]	18.33	0.8924

Compare expression of checked genes

Potri.006G007200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.