Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21790 427 / 4e-146 UDP-Glycosyltransferase superfamily protein (.1) AT3G21750 417 / 1e-142 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21780 417 / 2e-142 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21760 417 / 2e-142 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT4G15280 414 / 4e-141 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21800 409 / 5e-139 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT1G07250 369 / 2e-123 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT4G15260 359 / 2e-121 UDP-Glycosyltransferase superfamily protein (.1) AT1G07240 340 / 3e-112 UGT71C5 UDP-glucosyl transferase 71C5 (.1) AT1G07260 340 / 3e-112 UGT71C3 UDP-glucosyl transferase 71C3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G016700 [exp] 691 / 0 AT3G21750 409 / 3e-139 UDP-glucosyl transferase 71B1 (.1) Potri.016G016100 [exp] 677 / 0 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007350 [exp] 662 / 0 AT3G21790 427 / 5e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016300 [exp] 659 / 0 AT3G21790 425 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007400 [exp] 643 / 0 AT3G21790 380 / 9e-128 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016200 [exp] 641 / 0 AT3G21750 396 / 9e-135 UDP-glucosyl transferase 71B1 (.1) Potri.016G016800 [exp] 568 / 0 AT3G21780 412 / 5e-140 UDP-glucosyl transferase 71B6 (.1) Potri.016G016400 [exp] 565 / 0 AT3G21790 395 / 2e-133 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016900 [exp] 563 / 0 AT3G21750 422 / 8e-145 UDP-glucosyl transferase 71B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026795 [exp] 427 / 2e-146 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 427 / 3e-146 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 392 / 2e-132 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036086 [exp] 369 / 3e-123 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 350 / 6e-116 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039037 [exp] 340 / 7e-112 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 310 / 2e-100 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 307 / 4e-99 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 257 / 6e-80 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027334 [exp] 238 / 8e-76 AT1G07260 240 / 2e-77 UDP-glucosyl transferase 71C3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.006G007300.1 pacid=42767571 polypeptide=Potri.006G007300.1.p locus=Potri.006G007300 ID=Potri.006G007300.1.v4.1 annot-version=v4.1 ATGAAGAAAGCAGAGTTGGTGTTAATCCCAATACCTGCTAGGGGCCATATTGTTTCAGCAGTAGAGATAGCTAAGCTTCTTGTTCAGCGTGATGATCGCC TTTCCACAACTATCCTCATATATCCATCTCGTAACCCTGTCACTACCAAATACAACGAGTCACTTGCTGCATCAACACTCCCTGATCGTCTGCGAGTCAT TATCTTGCCCAGTGCTGAGTCATCAGATACTAAACCCCCTAACCAGTTTATAACTTCTGTGTATGAAGGCCAAAAACCCCTTGTCAGAGAATATGTTTCC AAGATCAAAACTCAGTCCGAGTTGAGCCCTGACTCTCCTCAATTTGCCGGGTTTATTTTTGATGCTTATGCTACAGGACTGAAAGATCTGGCTAATGAAT TTGATGTTCCATGGTACGCTTTCTGTGCCTCAGACGCTGCTTATCTTGGTTGCGTGTTACATCTTAAGGATCTTCATGATGAGCAGGGAGTGGACCTCAC TGAGCTCGGAAACTCGGATGCTGAGTTGGAAATTCCGAGCTTGGCGAACTCATTTCCTGTTAAATGCTTGCCTTTATCGTCACTCGTGAAAGAGACGCTC CCTATTGTTCTCGAGATTGCAGGAGGATTGACGGAAGCCAAAGGTATTTTGATAAATACATTTTTAGAGCTTGAACCGCATGCTGTTAACAGTCTTTCCA ATGGCAAGACCCCACCAGTGTATGCAGTGGGACCAATTGTTAAACATGAAGGAGATGATCGTGATACGGGATCAGATGGGAGCAAGAATTATAGGGACAT CATGGAATGGCTTGATGATCAGGCTCCATCATCGGTTCTGTTTTTGTGCTTTGGGAGTCTAGGAAGTTTTAGGTCGGAACAGGTGAAAGAGATCGCTTGT GCACTAGAACGTAGTGGACATCGATTCTTATGGTCCCTACGTAAACCTTCACCGAGTGGTAAATTGAAATCTCCGAGTGATTATGAGAATCTTCAAGAAG TTTTACCAGAAGGGTTTTTAGATCGAACAGCTAAGATCGGGAAGGTGATTGGATGGGCTCCACAAGTGGATATTTTGGCCCATCAAGCCGTGGGAGGATT TGCATCACATTGTGGATGGAATTCTATCCTAGAGAGCGTATGGTTTGGTGTTCCAATTGCCACTTGGCCATTGTATGCTGAGCAACAATATAATGCCTTT TATATGGTGATTGAGTTGGGGTTAGGGGTGGAAATTAAGATGGATTATACGATGAATCTTCAAGGAGATGATGAAATAATTGTAAATGCTGATGATATAA TGAAAGCAATAAAACATCTTATGGAGGAAGATAAAGAAATAAGAAAGAAGGTAAAGGAGATGAGCAGAATAAGTGAAAAAACGTTGATGCCTGGTGGATC TTCGCATTCTTCTTTGGGTCGTTTTATTGATGATATAATAGAAAACCTGTCATGA
AA sequence Show only first row Show all	>Potri.006G007300.1 pacid=42767571 polypeptide=Potri.006G007300.1.p locus=Potri.006G007300 ID=Potri.006G007300.1.v4.1 annot-version=v4.1 MKKAELVLIPIPARGHIVSAVEIAKLLVQRDDRLSTTILIYPSRNPVTTKYNESLAASTLPDRLRVIILPSAESSDTKPPNQFITSVYEGQKPLVREYVS KIKTQSELSPDSPQFAGFIFDAYATGLKDLANEFDVPWYAFCASDAAYLGCVLHLKDLHDEQGVDLTELGNSDAELEIPSLANSFPVKCLPLSSLVKETL PIVLEIAGGLTEAKGILINTFLELEPHAVNSLSNGKTPPVYAVGPIVKHEGDDRDTGSDGSKNYRDIMEWLDDQAPSSVLFLCFGSLGSFRSEQVKEIAC ALERSGHRFLWSLRKPSPSGKLKSPSDYENLQEVLPEGFLDRTAKIGKVIGWAPQVDILAHQAVGGFASHCGWNSILESVWFGVPIATWPLYAEQQYNAF YMVIELGLGVEIKMDYTMNLQGDDEIIVNADDIMKAIKHLMEEDKEIRKKVKEMSRISEKTLMPGGSSHSSLGRFIDDIIENLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007300 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	5.00	0.8146
AT5G52882			P-loop containing nucleoside t...		Potri.012G035400 [exp]	6.92	0.8071
AT1G02420			Pentatricopeptide repeat (PPR)...		Potri.007G079400 [exp]	7.48	0.8082
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016600 [exp]	10.24	0.7070
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.005G225300 [exp]	10.95	0.8003
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Potri.016G096400 [exp]	15.32	0.8028
AT5G54860			Major facilitator superfamily ...		Potri.011G137300 [exp]	15.81	0.7579
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.004G217900 [exp]	16.73	0.7913
AT5G26760			unknown protein		Potri.015G010900 [exp]	24.10	0.8000
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.001G243400 [exp]	24.49	0.7866

Compare expression of checked genes

Potri.006G007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.