Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21790 380 / 8e-128 UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 374 / 2e-125 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21800 360 / 3e-120 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT3G21750 360 / 3e-120 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21760 351 / 1e-116 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT4G15280 350 / 3e-116 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT4G15260 320 / 4e-106 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 308 / 9e-100 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G29730 296 / 2e-95 UGT71D1 UDP-glucosyl transferase 71D1 (.1) AT2G29740 294 / 1e-94 UGT71C2 UDP-glucosyl transferase 71C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G007350 [exp] 839 / 0 AT3G21790 427 / 5e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016100 [exp] 707 / 0 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016300 [exp] 699 / 0 AT3G21790 425 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016700 [exp] 666 / 0 AT3G21750 409 / 3e-139 UDP-glucosyl transferase 71B1 (.1) Potri.006G007300 [exp] 610 / 0 AT3G21790 427 / 4e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016800 [exp] 596 / 0 AT3G21780 412 / 5e-140 UDP-glucosyl transferase 71B6 (.1) Potri.016G016200 [exp] 595 / 0 AT3G21750 396 / 9e-135 UDP-glucosyl transferase 71B1 (.1) Potri.016G016600 [exp] 570 / 0 AT3G21780 330 / 2e-109 UDP-glucosyl transferase 71B6 (.1) Potri.016G016400 [exp] 561 / 0 AT3G21790 395 / 2e-133 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036087 [exp] 391 / 3e-132 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026795 [exp] 390 / 8e-132 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10026793 [exp] 370 / 2e-123 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036086 [exp] 360 / 6e-120 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 351 / 4e-116 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039037 [exp] 318 / 2e-103 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 273 / 5e-86 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 269 / 2e-84 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10027334 [exp] 248 / 7e-80 AT1G07260 240 / 2e-77 UDP-glucosyl transferase 71C3 (.1) Lus10039301 [exp] 227 / 1e-68 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.006G007400.1 pacid=42767456 polypeptide=Potri.006G007400.1.p locus=Potri.006G007400 ID=Potri.006G007400.1.v4.1 annot-version=v4.1 ATGAAGAAAGCAGGGGTGGTGTTAATCCCCGTACCTGCCATGGGTCATGTTGTGGCCCTGGTAGAGGTAGCTAAGCTTCTTGTTCAACGTGATGACAGGC TTTTCACCACTGTCATCATAATGCATCCAGCTCTTGATCCCAGCACCACCAAATACACCGAGTCACTTGCTGCATCAACTCTGCCTGATCGTATGCGAGT CGTTAACTTGCCGAAGCTTGAGTCCAAAACAGAAGATAATAAAGACCTTAACTGGCTCACTTCTATGATTGAAAGCCAAAAACCCCATGTCGAAGAATAT GTTTCGAAGATGAGAACTCAGTCCCAGTTGAGTCCGGACTCACCTCAACTTGCTGGGTTTATTTTTGATACGTTTGCTACTGGGATGAAAGATGTGGCTA ATGGATTTGGGGTTCCATGGTATGCTTTCTCTGCTTCAGGTGCAGCTTTTATTGGTTCCATGTTTTATCTTCAGGCTCTTCATGATGATGAGGGAGTGAA CCTTATTGAGTTCGAGGACTCGGATGCTCTGTTAGAAATTCCGAGTTTGGCAAGCCCACTTCCTGCTAAACTCTTGCCTTCGATGGTGTTCAAGCAAGAA TCCCTCACTATTTTTCTTGAACATGCAAGAATAATGAGGGAAGCAAGGAGTATCTTGGTAAATACATTTTTAGAGTTCGAATCTTATGCGGTTCACTCAC TTTCTAACGGCAAAAACCCTCCTGTGTATCCAGTTGGACCCATTGTGAAACATGTAGGAGATGCTCGTGATTTGCCGTCGGACGAGAGCAAGGACATTAT GGAATGGCTTGATGATCAACCTCCATCATCAGTTATGTTCTTATGCTTCGGCAGTTGGGGAAGTTTTTGTGGAAAACAGGTGAAAGAGATTGCTTGTGCA CTAGAACATTGTGGACATCGGTTTTTGTGGTCCTTGCGTAAACCTTCATCACAGGAAGGTAAAGTGGAATCACCAAGTGATTATCTAAATTTTCAAGAGA TTTTGCCTGAAGGTTTTTTGGATCGTACAATCAAGATCGGAAAGGTGATTGGATGGGCTCCCCAAGTGGAAATTTTAGCTCATCCAGCCGTGGGAGGATT TGCATCGCATTGCGGATGGAATTCTACACTAGAGAGTGTAAGATTTGGTGTTCCGGTGGCTACCTGGCCATTGTACGCAGAGCAACAATTTAATGCCTTC CAAATGGTGATTGACTTGGGATTAGCTGTGGAAATTAAAATGGATTACAGGAGGGATTTTCTTGGTGATAATGAGATAATTGTTTGTGAAGATATAGTGA AAGCAATAAAACATGTCATGGAGGAGGATGGCGAAGTGAGAAAGAAGGTAAAAGAGATGAGCAGAATAAGTGAGAAAAGCTTGAAGGATGGTGGATCTTC ATTCTCTTCGTTGGGTCGTCTAATTGAAGATATGATAGACAACATGTCTTAA
AA sequence Show only first row Show all	>Potri.006G007400.1 pacid=42767456 polypeptide=Potri.006G007400.1.p locus=Potri.006G007400 ID=Potri.006G007400.1.v4.1 annot-version=v4.1 MKKAGVVLIPVPAMGHVVALVEVAKLLVQRDDRLFTTVIIMHPALDPSTTKYTESLAASTLPDRMRVVNLPKLESKTEDNKDLNWLTSMIESQKPHVEEY VSKMRTQSQLSPDSPQLAGFIFDTFATGMKDVANGFGVPWYAFSASGAAFIGSMFYLQALHDDEGVNLIEFEDSDALLEIPSLASPLPAKLLPSMVFKQE SLTIFLEHARIMREARSILVNTFLEFESYAVHSLSNGKNPPVYPVGPIVKHVGDARDLPSDESKDIMEWLDDQPPSSVMFLCFGSWGSFCGKQVKEIACA LEHCGHRFLWSLRKPSSQEGKVESPSDYLNFQEILPEGFLDRTIKIGKVIGWAPQVEILAHPAVGGFASHCGWNSTLESVRFGVPVATWPLYAEQQFNAF QMVIDLGLAVEIKMDYRRDFLGDNEIIVCEDIVKAIKHVMEEDGEVRKKVKEMSRISEKSLKDGGSSFSSLGRLIEDMIDNMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007400 [exp]	0	1
AT1G06540			unknown protein		Potri.005G201300 [exp]	9.16	0.8914
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Potri.006G133300 [exp]	12.48	0.8778
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G151800 [exp]	15.29	0.8872
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	15.49	0.8768	Pt-ATCNGC19.3
AT2G47390			Prolyl oligopeptidase family p...		Potri.014G120600 [exp]	21.49	0.8723
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.007G096400 [exp]	22.58	0.8677
AT4G08790			Nitrilase/cyanide hydratase an...		Potri.010G214600 [exp]	24.81	0.8237
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	24.81	0.8692
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.005G073100 [exp]	25.45	0.8672
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G127600 [exp]	28.35	0.8119

Compare expression of checked genes

Potri.006G007400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.