Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22150 1089 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 444 / 5e-143 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 424 / 8e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 425 / 1e-135 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 420 / 5e-134 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 404 / 6e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 395 / 1e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 395 / 1e-124 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 393 / 2e-124 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 391 / 5e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215500 [exp] 467 / 7e-151 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 434 / 4e-139 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 431 / 4e-138 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 423 / 7e-136 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 426 / 3e-135 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G258500 [exp] 416 / 2e-132 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 414 / 3e-132 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 416 / 5e-131 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 411 / 2e-130 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010473 [exp] 1119 / 0 AT3G22150 1007 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003806 [exp] 1113 / 0 AT3G22150 997 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 440 / 2e-141 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 434 / 7e-140 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 437 / 1e-139 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 432 / 1e-137 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 430 / 1e-137 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016943 [exp] 424 / 1e-135 AT5G08490 924 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 417 / 4e-133 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 407 / 6e-130 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G007800.1 pacid=42768058 polypeptide=Potri.006G007800.1.p locus=Potri.006G007800 ID=Potri.006G007800.1.v4.1 annot-version=v4.1 ATGGCCATGGCCTCTACTTCTTCATCATCACTTCCAATCCCTCTCTCCACACCTTCCCATGACCCTTCTAATAAAACCCAGAAAACTTCTCTCTTTAGGA TCTCACCACCACCAAGCCCATCTCTTAAAACCCCATCAATTCGCTCTCGATTAAGCAAACTTTGCCAAGAGGGCCAGCCCCATATTGCACTCCAACTGTT TGACACATTTCCCCGCCCAACCACTGTCATCTGTAACACCATCATAATTGGCTTCATTTGCAATAACTTGCCTCTTGAAGCCATTTTGTTCTATTCCAAG TTAAAAAGTTCAAGTCTTGGCACCAAATTTGATTCCTATACCTACTCTTCTACACTCAAAGCTTGCGCTGAAACGCGCAGTTTAAAGATTGGTAGAGCCA TTCATTGTCATCTTATTCGGTGTTTATCAAATCCGAGTAGAATTGTCTACAATTCCCTTTTGAATATGTACTCTAGTTGTTTGAGTAATGTGGGTTGTTT GAGTTATTTAGATTACTCTAAGTATGATTTAGTGCATAAAGTTTTTGATACAATGAGAAAGAGAGATGTTGTTGCTTGGAATACTATGGTTTCTTGGTAT GTGAAGACAGAAAGATATGTAGAAGCAATTAGGCTATTTAGGTTGGTGATGAAAATGGGCATTAAACCGAGTCCGGTTAGTTTTGTCAACGTTTTTCCTG CTTTTTCGAGTGTTGAAGATTTTAAGAATGCTAATGCTCTTTATGGGATGCTTGTTAAAATGGGTAGTGAATATGTGAATGACTTGTTTGTTGTGAGCTC GGCGATATTCATGTTTGCAGAGCTTGGACATATTGATTTTGCTAGGAAGGTTTTTGACCATTGTTTGGAGAAGAATACGGAGATTTGGAACACTATGATT GGTGGATATGTACAGAATAATCTTTTGATTGAAGGCATTGATCTTTTCCTTAAAGCTGTGGAAACAGAACAGACGGTTCTTGATGATGTAACCTTTCTCT CGGTTTTAACGGCTGTTTCACAGCTGCAGTGTTTGGACTTGGCTCAACAACAGCATGCCTTTGTGATTAAGAATCTAGCAGTATTTCCCGTGATGATAAC GAATGCAATCATTGTGATGTACTCAAGGTGCAATTCTGTCCACACTTCTTTTGAAGTATTCGAGAAGATGGTGGAAAGAGATGTTGTATCTTGGAATACC ATGATTTCTGCTTTTGTACAGAATGGAATGGATGATGAGGGGTTGATGCTTGTATATGAGATGCAGAAGCAAGGGTTTGCAATTGATTCTGTGACAGTGA CTGCTCTACTTTCTGCAGCATCTAACCTTAGAAGCCAGGAAATTGGAAAGCAGACCTATGCTTATCTTCTTAGGCATGGGATACAATTTGAAGGAATGGA TGGTTATCTTATAGACATGTATGCAAAATGTGGCCTGATTAGGCTTTCACAACGGATTTTTGAGAGAAGCAATGTGAACAATAGAGATCAAGCCACGTGG AATGCTATGATCGCTGGGTACACACAGCATGGGCTAGTAGAAGAAGCTTTTGTTACCTTTAGACAAATGCTTGAGAAAAATGTAATGCCTAATGCTGTAA CTTTAGCAACCATTCTCCCAGCCTGTAATCCTGTGGGAAATATAGATTTGGGAAAGCAACTCCATGGAGTCTCCATTCGGCTGTTGTTGGACAAAAATAT ATTTGTCAGCACTTCCCTTGTTGACATGTACTCGAAATCAGGCTCAATCAATTATGCTGAAAGTGTGTTTACCAAATTACCAGACAAAAACTCTGTCACC TATACAACAATGATATTGGCCTATGGTCAACATGGGATGGGCGAGAGAGCTCTCTCCTTGTTTCACTCAATGAAGAAATCCGGGATTGAACCCGATGCCA TAACTTTTATTGCTGTCTTGTCAGCTTGCAGTCACTCAGGTTTGGTTGATGAAGGTCTTCAAATATTTGAGTCAATGGAGAAGGATTTTAAGATTCAACC CTCAACTCCGCACTATTGCTGTGTTACAGACATGTTAGGGAGAGTTGGTAGGGTGGTTGAAGCATACGAGTTTGTTAAACAATTGGGTGAAGCTGGCAAT GTGTTGGAAATCTGGGGATCACTTCTCGGGGCTTGCAGACTCCATGAACACGTTGAATTGGGAGAAGTTGTTGCCAAGAAGTTGCTTGAAATGGAGAAAA CAGGCAACATTACAGGCTATCATGTTTTGCTCTCCAATATATATGCTGAGGAAGGAAACTGGGTAAATGTTGATAAAGTAAGGAGAGAGATGAGGGAAAA GGGTTTGCAAAAGGAAGTTGGCTCCAGTTGGATTGATATCGGAGGTTCTGTGGCCCGTTTTACATCGAAAGATCAAGACCACCCTCACTCTGATAAAATA TATGAAATGTTGGCGGGATTGGCTATGGAGATGAAAAAAAGTGATCGTAGTCCTCAAATCAATCCATGA
AA sequence Show only first row Show all	>Potri.006G007800.1 pacid=42768058 polypeptide=Potri.006G007800.1.p locus=Potri.006G007800 ID=Potri.006G007800.1.v4.1 annot-version=v4.1 MAMASTSSSSLPIPLSTPSHDPSNKTQKTSLFRISPPPSPSLKTPSIRSRLSKLCQEGQPHIALQLFDTFPRPTTVICNTIIIGFICNNLPLEAILFYSK LKSSSLGTKFDSYTYSSTLKACAETRSLKIGRAIHCHLIRCLSNPSRIVYNSLLNMYSSCLSNVGCLSYLDYSKYDLVHKVFDTMRKRDVVAWNTMVSWY VKTERYVEAIRLFRLVMKMGIKPSPVSFVNVFPAFSSVEDFKNANALYGMLVKMGSEYVNDLFVVSSAIFMFAELGHIDFARKVFDHCLEKNTEIWNTMI GGYVQNNLLIEGIDLFLKAVETEQTVLDDVTFLSVLTAVSQLQCLDLAQQQHAFVIKNLAVFPVMITNAIIVMYSRCNSVHTSFEVFEKMVERDVVSWNT MISAFVQNGMDDEGLMLVYEMQKQGFAIDSVTVTALLSAASNLRSQEIGKQTYAYLLRHGIQFEGMDGYLIDMYAKCGLIRLSQRIFERSNVNNRDQATW NAMIAGYTQHGLVEEAFVTFRQMLEKNVMPNAVTLATILPACNPVGNIDLGKQLHGVSIRLLLDKNIFVSTSLVDMYSKSGSINYAESVFTKLPDKNSVT YTTMILAYGQHGMGERALSLFHSMKKSGIEPDAITFIAVLSACSHSGLVDEGLQIFESMEKDFKIQPSTPHYCCVTDMLGRVGRVVEAYEFVKQLGEAGN VLEIWGSLLGACRLHEHVELGEVVAKKLLEMEKTGNITGYHVLLSNIYAEEGNWVNVDKVRREMREKGLQKEVGSSWIDIGGSVARFTSKDQDHPHSDKI YEMLAGLAMEMKKSDRSPQINP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	0	1
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	2.23	0.9758
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	4.24	0.9672
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	5.00	0.9627
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	6.92	0.9545
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	7.54	0.9656
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	8.48	0.9643
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	9.79	0.9582
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Potri.016G074800 [exp]	9.89	0.9501
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.016G136700 [exp]	11.00	0.9531
AT3G52170			DNA binding (.1.2)		Potri.010G231900 [exp]	11.40	0.9519

Compare expression of checked genes

Potri.006G007800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.