Plant FIBer expression Database

Potri.006G009100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12610 289 / 9e-93 RAP74, ATRAP74 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
AT2G27950 43 / 0.0008 Ring/U-Box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G015100
[exp]
725 / 0 AT4G12610 202 / 1e-59 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008686
[exp]
509 / 6e-177 AT4G12610 313 / 3e-102 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
Lus10026142
[exp]
473 / 1e-154 AT3G11440 370 / 5e-115 myb domain protein 65 (.1)
Lus10017289
[exp]
437 / 2e-148 AT4G12610 270 / 1e-85 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF05793 TFIIF_alpha Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Representative CDS sequence
>Potri.006G009100.3 pacid=42769480 polypeptide=Potri.006G009100.3.p locus=Potri.006G009100 ID=Potri.006G009100.3.v4.1 annot-version=v4.1
ATGTCGTTCGATCTTCAGTTACAGCCGTCGTGTAGTGGCTGTGGCAGCACCACAGATTTGTACGGAAGCAATTGCAAGCATATGACGTTGTGCTTGACTT
GTGGCAAAACAATGGCGGAGAATCGCGGCAAATGCTTTGATTGTGGCGCTATCGTTACTCGCCTGATTCGAGAGTATAATGTGAGGGCGAGTACGAGTAG
CGAAAAGAATTATTTTATAGGAAGATTTGTGACCGGATTGCCAGGTTTTTCGAAGAAAAAAAATGCCGAGAATAAATGGTCTTTGCTGAAAGAAGGAATT
CATGGTCGCCAAATTACTGATACTTTGCGGGAGAAGTTTAAGAATAAGCCATGGCTTTTGGAGGATGAAACTGGGCAGTTTCAGTATCAGGGTCATCTTG
AAGGGTCGCAATCGGCGACTTATTATCTGTTGATGATGTCTGGGAAAGAGTTTGTTGCTATTCCTGCTGGTTCTTGGTACAACTTTAACAAGGTTGCGCA
CTATAAGCAACTTACCTTGGAGGAAGCGGAAGAGAAGATGAAGAATAGGAGGAAGACTGCAGATGGATATGAAAGGTGGATGATGAAAGCTGCACATAAT
GGAGCTGCTGCATTTGGTGAGGTGGAGAAGCCAGATGATAAGGATGGTGTTTCAGCTGGTGGAAGGGGAGGTCGGAAAAAAGCAAACGGTGATGATGATG
AGGGCAATGTGTCTGACAAGGGAGAGGAAGACGAGGAGGAAGAGGCGGGAAGGAAGAGTAGGCTTGGACTCAATAAAGGGGGTGGTGATGATGATGAAGA
AGGTCCAAGAGGAGGTGATCTTGATATGGATGATGATGATATTGAGAAGGGCGATGATTGGGAGCACGAAGAAATTTTCACTGATGATGATGAAGCTGTT
GCCATTGATCCTGAGGAACGGGAAGATTTAGCCCCTGAAGTTCCTGCTCCTCCTGAAATCAAGCAGGATGAAGAGGACGAGGATGAGGAGAATGAGGAGG
GAGGACTGAGCAAATCTGGGAAAGAGTTGAAGAAGCTACTTGGGAAAGCAAATGGTCTGAACGAGTCAGATGCAGAAGATGATGATGACGATGATGACAT
GGATGATGATATTTCTCCTGTACTGGCTCCAAAGCAGAAGGATGCTGTGCCAAAGGAGGAACCTGCTGACAATAGTCCTGCAAAACCAACGCCACCTGGT
TCTGCTAAGGGAACCCCTTCTACCTCCAAGTCAGCTAAGGGGAAAAGAAAACTGAATGCTGATGATGCAAAAACTTCTAATGGTGCACCTGTGAAGAAGG
TGAAGACAGAAAATGAAGTAAAACCTACCGTGAAAGAAGAAAGCTCTCCTGCTACTAAAGGTACTGCAACTCCTAAAATAATGCCATCATCGTCAAAAAC
CGGGCCAACATCAGGGCCAACTGGCCCTGTCACCGAGGAAGAGATTAGGGCTGTTTTGTTGCAAAATGGACCCGTAACTACACAGGATCTGGTGGCTAGG
TTTAAATCACGACTAAGGACTCCTGAGGACAAGAAGGCTTTTGCGGATATTCTAAGGAGAATTTCTAAGATTCAGAAGACCAGTGGATCTAACTTTGTTG
TGTTGAGGGACAAACGATAA
AA sequence
>Potri.006G009100.3 pacid=42769480 polypeptide=Potri.006G009100.3.p locus=Potri.006G009100 ID=Potri.006G009100.3.v4.1 annot-version=v4.1
MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYNVRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGI
HGRQITDTLREKFKNKPWLLEDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMMKAAHN
GAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVSDKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV
AIDPEEREDLAPEVPAPPEIKQDEEDEDEENEEGGLSKSGKELKKLLGKANGLNESDAEDDDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPG
SAKGTPSTSKSAKGKRKLNADDAKTSNGAPVKKVKTENEVKPTVKEESSPATKGTATPKIMPSSSKTGPTSGPTGPVTEEEIRAVLLQNGPVTTQDLVAR
FKSRLRTPEDKKAFADILRRISKIQKTSGSNFVVLRDKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G12610 RAP74, ATRAP74 transcription activators;DNA b... Potri.006G009100
[exp]
0 1
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.002G139700
[exp]
3.00 0.7858
AT3G27700 C3HZnF zinc finger (CCCH-type) family... Potri.017G072100
[exp]
3.16 0.8311
AT3G56860 UBA2A UBP1-associated protein 2A (.1... Potri.016G023800
[exp]
5.09 0.7877
AT2G36960 MYB TKI1 TSL-kinase interacting protein... Potri.016G091700
[exp]
5.83 0.6786 Pt-TKI1.1
AT3G49730 Tetratricopeptide repeat (TPR)... Potri.002G176100
[exp]
5.91 0.7610
AT3G50690 Leucine-rich repeat (LRR) fami... Potri.005G124700
[exp]
6.32 0.7844
AT1G13190 RNA-binding (RRM/RBD/RNP motif... Potri.010G051600
[exp]
9.48 0.7807
AT5G17900 microfibrillar-associated prot... Potri.019G039900
[exp]
11.18 0.7843
AT4G01000 Ubiquitin-like superfamily pro... Potri.002G170200
[exp]
16.97 0.7549
AT2G06040 unknown protein Potri.006G220600
[exp]
19.33 0.7448

Potri.006G009100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.