Plant FIBer expression Database

Potri.006G009200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12050 727 / 0 fumarylacetoacetase, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010485
[exp]
701 / 0 AT1G12050 672 / 0.0 fumarylacetoacetase, putative (.1)
Lus10003798
[exp]
692 / 0 AT1G12050 667 / 0.0 fumarylacetoacetase, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0377 FAH PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
CL0377 PF09298 FAA_hydrolase_N Fumarylacetoacetase N-terminal
Representative CDS sequence
>Potri.006G009200.1 pacid=42769671 polypeptide=Potri.006G009200.1.p locus=Potri.006G009200 ID=Potri.006G009200.1.v4.1 annot-version=v4.1
ATGGCTTTGAAATCCTTCATCGAAGTCGGCCCTGACTCTCACTTCCCTATCCAGAACCTTCCGTTCGGTATCTTCAAGCCTGAACCTACTTCGCCTCCCA
GACCCGGCGTAGCGATCGGCGATTACGTGTTGGACTTGTCCACCATCTCTGTTTCCGGCCTCTTTGATGGTCCGTTTCTCTCCGGCTCCGATTGCTTCCT
CCAGCCAAATTTGAACAAGTTCCTAGCGTTGGGAAGGCCAGCGTGGAAGGAAGCACGGGCGACGCTTCAAAACTTATTATCAGCTGATGAGGCTAAGTTG
CGTGATAATCCGAATCTGAGGGAGAAATCGCTTGTTCCGATGAGCAAAGTGGAAATGCTACTTCCAATTGCGATAGGGGATTATACGGATTTCTTTTCAT
CAATGCATCATGCGAGGAATTGCGGAATAATGTTTCGAGGGCCAGAGAATGCGATTAATCCTAACTGGTTCCAGCTTCCCATTGCATATCATGGACGATC
TTCGTCTATTGTTGTATCTGGGACGGATATTATTCGACCAAGAGGTCAAGGCCATCCAAGTGGAAACTCCCCACCATATTTTGGACCTTCAAGGAAGCTA
GACTTTGAATTAGAAATGGCTGCTGTAGTTGGTCCTGGAAATGAATTGGGTAAACCTGTGGATGTTAATGAAGCTGGAGATCATATTTTTGGACTTGTAT
TGATGAATGATTGGAGTGCTAGAGATATTCAAGCATGGGAATACGTGCCTCTTGGGCCTTTTCTTGGAAAGAGTTTCGGTACAACATTATCCCCTTGGAT
TGTGACACTTGATGCTTTAGAGCCATTTGCTTGCGATGCCCCAAAACAGGATCCCCAGCCCTTACCATATCTGGCTGAAAAGATATCGAAAAACTATGAC
ATTTCATTAGAGGTTCAAATCAAACCAGCTGGTCAAGAAGATTCATGTGTGGTCACAAGAAGCAACTTCAATCACTTGTATTGGACAGTGACTCAACAGC
TTGCACACCATACAATAAATGGTTGCAACTTAAGGCCAGGGGATCTACTTGGAAGTGGGACGATCAGTGGACCTGAGCCAGAATCTTATGGATGCTTGTT
AGAGCTGACATGGAATGGACAAAAGTCACTCTCACTAAATGGAACAACAAGGAAATTCCTTGAAGATGGAGATGAAGTCGTGTTCAGTGGATGTTCCAAG
GGAGACGGTTACAAAGTGGGGTTTGGCACATGCTCTGGAAAAATCCTGCCATCACCCTGA
AA sequence
>Potri.006G009200.1 pacid=42769671 polypeptide=Potri.006G009200.1.p locus=Potri.006G009200 ID=Potri.006G009200.1.v4.1 annot-version=v4.1
MALKSFIEVGPDSHFPIQNLPFGIFKPEPTSPPRPGVAIGDYVLDLSTISVSGLFDGPFLSGSDCFLQPNLNKFLALGRPAWKEARATLQNLLSADEAKL
RDNPNLREKSLVPMSKVEMLLPIAIGDYTDFFSSMHHARNCGIMFRGPENAINPNWFQLPIAYHGRSSSIVVSGTDIIRPRGQGHPSGNSPPYFGPSRKL
DFELEMAAVVGPGNELGKPVDVNEAGDHIFGLVLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDAPKQDPQPLPYLAEKISKNYD
ISLEVQIKPAGQEDSCVVTRSNFNHLYWTVTQQLAHHTINGCNLRPGDLLGSGTISGPEPESYGCLLELTWNGQKSLSLNGTTRKFLEDGDEVVFSGCSK
GDGYKVGFGTCSGKILPSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12050 fumarylacetoacetase, putative ... Potri.006G009200
[exp]
0 1
AT5G05270 Chalcone-flavanone isomerase f... Potri.019G057800
[exp]
1.00 0.9353
AT5G49900 Beta-glucosidase, GBA2 type fa... Potri.004G227200
[exp]
2.44 0.8404
AT5G49330 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSI... Potri.001G086700
[exp]
2.44 0.8852
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Potri.013G073300
[exp]
9.38 0.8506 F3H1
AT1G65060 4CL3 4-coumarate:CoA ligase 3 (.1.2... Potri.019G049500
[exp]
10.00 0.8427 Ptr4CL4,4CL3.1
AT3G55120 A11, CFI, TT5 TRANSPARENT TESTA 5, CHALCONE ... Potri.010G213000
[exp]
12.96 0.8255 CHI.1
AT4G24204 RING/U-box superfamily protein... Potri.007G050500
[exp]
14.38 0.8085
AT5G14700 NAD(P)-binding Rossmann-fold s... Potri.017G110500
[exp]
14.69 0.8506
AT4G30470 NAD(P)-binding Rossmann-fold s... Potri.006G178700
[exp]
18.73 0.7292
AT1G45000 AAA-type ATPase family protein... Potri.009G120500
[exp]
20.39 0.7517

Potri.006G009200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.